myRT

myRT report for GCA_900486615.1_18787_4_84

Download annotations/find similar RTs

Seq: UDWG01000115.1 Shigella flexneri strain 4028STDY6274997 genome assembly, contig: ERS1017657SCcontig000115, whole genome shotgun sequence (10854 bp)
Overview 1 RT 1: 538-8430 bp Neighborhood of RT #1 [538, 8495] PAP2_acid_phosphatase Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 538-1287 bp Feature: domain Description: PAP2_acid_phosphatase Location: 613-1267 bp Feature: domain Description: PAP2_acid_phosphatase Location: 61 3-1 267 bp Feature: gene Location: 1683-1883 bp Feature: domain Description: Tra5 Location: 1692-1866 bp Feature: domain Description: Tra5 Location: 1 692-1 866 bp Feature: gene Location: 1896-2699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2196-2691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 96-2691 bp Feature: gene Location: 2752-3078 bp Feature: domain Description: GIIM Note: maturase Location: 2785-3004 bp Feature: domain Description: GIIM Note: maturase Location: 2785-3004 bp Feature: gene Location: 3431-3673 bp Feature: gene Location: 3585-5237 bp Feature: domain Description: ushA Location: 3597-5235 bp Feature: domain Description: ushA Location: 3597-5235 bp Feature: gene Location: 5578-6024 bp Feature: domain Description: PHA02517 Location: 5581-6022 bp Feature: domain Description: PHA0251 7 Location: 5581 -6022 bp Feature: gene Location: 6141-7664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6414-7146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641 4-71 46 bp Feature: domain Description: GIIM Note: maturase Location: 7221-7419 bp Feature: domain Description: GIIM Note: maturase Location: 7221 -741 9 bp Feature: gene Location: 7618-8043 bp Feature: gene Location: 8256-8495 bp Feature: domain Description: PHA02517 Location: 8259-8430 bp Feature: domain Description: PHA0251 7 Location: 8259-8430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)

Seq: UDWG01000162.1 Shigella flexneri strain 4028STDY6274997 genome assembly, contig: ERS1017657SCcontig000162, whole genome shotgun sequence (5965 bp)
Overview 1 RT 1: 3210-5863 bp Neighborhood of RT #1 [3210, 5863] COG3547 RVT-GII GIIM Feature: gene Location: 3210-3695 bp Feature: domain Description: COG3547 Location: 3228-3681 bp Feature: domain Description: COG3547 Location: 32 2 8-3681 bp Feature: gene Location: 3791-3958 bp Feature: gene Location: 3984-5201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4170-4824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4170-482 4 bp Feature: domain Description: GIIM Note: maturase Location: 4902-5124 bp Feature: domain Description: GIIM Note: maturase Location: 4902 -512 4 bp Feature: gene Location: 5212-5595 bp Feature: gene Location: 5669-5863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)