myRT

myRT report for GCA_900486625.1_18787_4_78

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Seq: UDWD01000158.1 Shigella flexneri strain 4028STDY6274991 genome assembly, contig: ERS1017645SCcontig000158, whole genome shotgun sequence (5968 bp)
Overview 1 RT 1: 3213-5866 bp Neighborhood of RT #1 [3213, 5866] COG3547 RVT-GII GIIM Feature: gene Location: 3213-3698 bp Feature: domain Description: COG3547 Location: 3231-3684 bp Feature: domain Description: COG3547 Location: 3231 -3684 bp Feature: gene Location: 3794-3961 bp Feature: gene Location: 3987-5204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4173-4827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 73-4827 bp Feature: domain Description: GIIM Note: maturase Location: 4905-5127 bp Feature: domain Description: GIIM Note: maturase Location: 4905-51 27 bp Feature: gene Location: 5215-5598 bp Feature: gene Location: 5672-5866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWD01000108.1 Shigella flexneri strain 4028STDY6274991 genome assembly, contig: ERS1017645SCcontig000108, whole genome shotgun sequence (11341 bp)
Overview 1 RT 1: 526-9465 bp Neighborhood of RT #1 [526, 9530] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 526-1275 bp Feature: domain Description: PAP2_acid_phosphatase Location: 601-1255 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 601-12 55 bp Feature: gene Location: 1671-1871 bp Feature: domain Description: Tra5 Location: 1680-1854 bp Feature: domain Description: Tra5 Location: 1680-1854 bp Feature: gene Location: 1884-2414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2184-2346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 184-2 346 bp Feature: gene Location: 2676-2876 bp Feature: domain Description: Tra5 Location: 2685-2859 bp Feature: domain Description: Tra5 Location: 2 685-2 859 bp Feature: gene Location: 2889-3692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3189-3684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3189-3684 bp Feature: gene Location: 3745-4071 bp Feature: domain Description: GIIM Note: maturase Location: 3778-3997 bp Feature: domain Description: GIIM Note: maturase Location: 3778-3997 bp Feature: gene Location: 4424-4666 bp Feature: gene Location: 4578-6230 bp Feature: domain Description: ushA Location: 4590-6228 bp Feature: domain Description: ushA Location: 4590-62 2 8 bp Feature: gene Location: 6571-7017 bp Feature: domain Description: PHA02517 Location: 6574-7015 bp Feature: domain Description: PHA02 517 Location: 6574-7015 bp Feature: gene Location: 7134-8657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7407-8139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7407-8139 bp Feature: domain Description: GIIM Note: maturase Location: 8214-8412 bp Feature: domain Description: GIIM Note: maturase Location: 82 14-8412 bp Feature: gene Location: 8611-9036 bp Feature: gene Location: 9249-9530 bp Feature: domain Description: PHA02517 Location: 9255-9465 bp Feature: domain Description: PHA02 517 Location: 92 55-9465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)