myRT

myRT report for GCA_900486635.1_18787_4_32

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Seq: UDWH01000123.1 Shigella flexneri strain 4028STDY6274945 genome assembly, contig: ERS1017574SCcontig000123, whole genome shotgun sequence (9464 bp)
Overview 1 RT 1: 4955-8405 bp Neighborhood of RT #1 [4955, 8470] DUF2534 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 4955-5122 bp Feature: domain Description: DUF2534 Location: 4970-5120 bp Feature: domain Description: DUF2534 Location: 4970-51 20 bp Feature: gene Location: 5322-5726 bp Feature: domain Description: PHA02517 Location: 5325-5715 bp Feature: domain Description: PHA0251 7 Location: 5325-571 5 bp Feature: gene Location: 5891-7414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6164-6896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 64-6896 bp Feature: domain Description: GIIM Note: maturase Location: 6971-7169 bp Feature: domain Description: GIIM Note: maturase Location: 6971 -71 69 bp Feature: gene Location: 7368-7793 bp Feature: gene Location: 8006-8470 bp Feature: domain Description: PHA02517 Location: 8078-8405 bp Feature: domain Description: PHA0251 7 Location: 8078-8405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2534 (pfam10749), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDWH01000030.1 Shigella flexneri strain 4028STDY6274945 genome assembly, contig: ERS1017574SCcontig000030, whole genome shotgun sequence (46577 bp)
Overview 1 RT 1: 2-3190 bp Neighborhood of RT #1 [2, 3198] PHA02517 RVT-GII GIIM PHA02517 Inovirus_Gp2 Feature: gene Location: 2-139 bp Feature: domain Description: PHA02517 Location: 8-74 bp Feature: domain Description: PHA02 517 Location: 8-74 bp Feature: gene Location: 731-2254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1736 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2009 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2 009 bp Feature: gene Location: 2431-2817 bp Feature: domain Description: PHA02517 Location: 2434-2815 bp Feature: domain Description: PHA02 517 Location: 2 434-2 815 bp Feature: gene Location: 2857-3198 bp Feature: domain Description: Inovirus_Gp2 Location: 2926-3190 bp Feature: domain Description: Inovirus_Gp2 Location: 2 92 6-3190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), Inovirus_Gp2 (pfam11726), RVT-GII, GIIM (pfam08388)

Seq: UDWH01000155.1 Shigella flexneri strain 4028STDY6274945 genome assembly, contig: ERS1017574SCcontig000155, whole genome shotgun sequence (6295 bp)
Overview 1 RT 1: 979-4114 bp Neighborhood of RT #1 [979, 4114] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 979-1728 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1054-1708 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1054-1708 bp Feature: gene Location: 2124-2324 bp Feature: domain Description: Tra5 Location: 2133-2307 bp Feature: domain Description: Tra5 Location: 213 3 -23 07 bp Feature: gene Location: 2337-3140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 7-3 13 2 bp Feature: gene Location: 3193-3519 bp Feature: domain Description: GIIM Note: maturase Location: 3226-3445 bp Feature: domain Description: GIIM Note: maturase Location: 3 226-3 445 bp Feature: gene Location: 3872-4114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWH01000161.1 Shigella flexneri strain 4028STDY6274945 genome assembly, contig: ERS1017574SCcontig000161, whole genome shotgun sequence (5962 bp)
Overview 1 RT 1: 3207-5860 bp Neighborhood of RT #1 [3207, 5860] COG3547 RVT-GII GIIM Feature: gene Location: 3207-3692 bp Feature: domain Description: COG3547 Location: 3225-3678 bp Feature: domain Description: COG354 7 Location: 3225-3678 bp Feature: gene Location: 3788-3955 bp Feature: gene Location: 3981-5198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4167-4821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 167-4 821 bp Feature: domain Description: GIIM Note: maturase Location: 4899-5121 bp Feature: domain Description: GIIM Note: maturase Location: 4 899-5121 bp Feature: gene Location: 5209-5592 bp Feature: gene Location: 5666-5860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)