myRT

myRT report for GCA_900486645.1_18787_4_37

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Seq: UDWC01000079.1 Shigella flexneri strain 4028STDY6274950 genome assembly, contig: ERS1017579SCcontig000079, whole genome shotgun sequence (17986 bp)
Overview 1 RT 1: 12678-15813 bp Neighborhood of RT #1 [12678, 15813] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 12678-13427 bp Feature: domain Description: PAP2_acid_phosphatase Location: 12753-13407 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 2753-1 3407 bp Feature: gene Location: 13823-14023 bp Feature: domain Description: Tra5 Location: 13832-14006 bp Feature: domain Description: Tra5 Location: 1 3832-1 4006 bp Feature: gene Location: 14036-14839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14336-14831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4336-1 4831 bp Feature: gene Location: 14892-15218 bp Feature: domain Description: GIIM Note: maturase Location: 14925-15144 bp Feature: domain Description: GIIM Note: maturase Location: 1 4925-1 51 44 bp Feature: gene Location: 15571-15813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDWC01000012.1 Shigella flexneri strain 4028STDY6274950 genome assembly, contig: ERS1017579SCcontig000012, whole genome shotgun sequence (65262 bp)
Overview 1 RT 1: 40143-43845 bp Neighborhood of RT #1 [40143, 43859] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 40143-40490 bp Feature: domain Description: TnpB_IS66 Location: 40170-40461 bp Feature: domain Description: TnpB_IS66 Location: 40170-40461 bp Feature: gene Location: 40510-41391 bp Feature: domain Description: COG3436 Location: 40819-41293 bp Feature: domain Description: COG3436 Location: 40819-412 93 bp Feature: gene Location: 41868-43085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42054-42708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 054-42 708 bp Feature: domain Description: GIIM Note: maturase Location: 42786-43008 bp Feature: domain Description: GIIM Note: maturase Location: 42 786-43008 bp Feature: gene Location: 43201-43347 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43213-43324 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 432 13-4332 4 bp Feature: gene Location: 43374-43859 bp Feature: domain Description: COG3547 Location: 43392-43845 bp Feature: domain Description: COG3547 Location: 43392 -43845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UDWC01000035.1 Shigella flexneri strain 4028STDY6274950 genome assembly, contig: ERS1017579SCcontig000035, whole genome shotgun sequence (39232 bp)
Overview 1 RT 1: 3260-10676 bp Neighborhood of RT #1 [3260, 10678] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3260-3388 bp Feature: gene Location: 3478-3717 bp Feature: domain Description: PHA02517 Location: 3481-3652 bp Feature: domain Description: PHA02517 Location: 3 481-3 652 bp Feature: gene Location: 4309-5832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582-5314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582-53 14 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: domain Description: GIIM Note: maturase Location: 53 89-5587 bp Feature: gene Location: 6009-6395 bp Feature: domain Description: PHA02517 Location: 6012-6393 bp Feature: domain Description: PHA02517 Location: 6012-63 93 bp Feature: gene Location: 6560-10678 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: ESPR Location: 6563 -663 2 bp Feature: domain Description: Peptidase_S6 Location: 6713-8885 bp Feature: domain Description: Peptidase_S6 Location: 6713 -8885 bp Feature: domain Description: autotrans_barl Location: 9449-10676 bp Feature: domain Description: autotrans_barl Location: 9449-10676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)