myRT

myRT report for GCA_900486655.1_18787_4_52

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Seq: UDVZ01000196.1 Shigella flexneri strain 4028STDY6274965 genome assembly, contig: ERS1017594SCcontig000196, whole genome shotgun sequence (4117 bp)
Overview 1 RT 1: 3-1936 bp Neighborhood of RT #1 [3, 1936] Tra5 RVT-GII GIIM Feature: gene Location: 3-146 bp Feature: domain Description: Tra5 Location: 6-129 bp Feature: domain Description: Tra5 Location: 6-1 29 bp Feature: gene Location: 159-962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-954 bp Feature: gene Location: 1015-1341 bp Feature: domain Description: GIIM Note: maturase Location: 1048-1267 bp Feature: domain Description: GIIM Note: maturase Location: 1 048-1 267 bp Feature: gene Location: 1694-1936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: UDVZ01000167.1 Shigella flexneri strain 4028STDY6274965 genome assembly, contig: ERS1017594SCcontig000167, whole genome shotgun sequence (5964 bp)
Overview 1 RT 1: 3209-5862 bp Neighborhood of RT #1 [3209, 5862] COG3547 RVT-GII GIIM Feature: gene Location: 3209-3694 bp Feature: domain Description: COG3547 Location: 3227-3680 bp Feature: domain Description: COG3547 Location: 32 2 7-3680 bp Feature: gene Location: 3790-3957 bp Feature: gene Location: 3983-5200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4169-4823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4169-482 3 bp Feature: domain Description: GIIM Note: maturase Location: 4901-5123 bp Feature: domain Description: GIIM Note: maturase Location: 4901-512 3 bp Feature: gene Location: 5211-5594 bp Feature: gene Location: 5668-5862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDVZ01000019.1 Shigella flexneri strain 4028STDY6274965 genome assembly, contig: ERS1017594SCcontig000019, whole genome shotgun sequence (56380 bp)
Overview 1 RT 1: 3239-10655 bp Neighborhood of RT #1 [3239, 10657] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA02517 Location: 3 460-3 63 1 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 53 68-5566 bp Feature: gene Location: 5988-6374 bp Feature: domain Description: PHA02517 Location: 5991-6372 bp Feature: domain Description: PHA02517 Location: 5991-63 72 bp Feature: gene Location: 6539-10657 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)