myRT

myRT report for GCA_900486665.1_18787_4_82

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Seq: UDWF01000019.1 Shigella flexneri strain 4028STDY6274995 genome assembly, contig: ERS1017653SCcontig000019, whole genome shotgun sequence (56264 bp)
Overview 1 RT 1: 3140-10556 bp Neighborhood of RT #1 [3140, 10558] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3140-3268 bp Feature: gene Location: 3358-3597 bp Feature: domain Description: PHA02517 Location: 3361-3532 bp Feature: domain Description: PHA0251 7 Location: 3361 -3532 bp Feature: gene Location: 4189-5712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4462-5194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4462-51 94 bp Feature: domain Description: GIIM Note: maturase Location: 5269-5467 bp Feature: domain Description: GIIM Note: maturase Location: 5269-5467 bp Feature: gene Location: 5889-6275 bp Feature: domain Description: PHA02517 Location: 5892-6273 bp Feature: domain Description: PHA0251 7 Location: 5892-6273 bp Feature: gene Location: 6440-10558 bp Feature: domain Description: ESPR Location: 6443-6512 bp Feature: domain Description: ESPR Location: 6443-651 2 bp Feature: domain Description: Peptidase_S6 Location: 6593-8765 bp Feature: domain Description: Peptidase_S6 Location: 6593-8765 bp Feature: domain Description: autotrans_barl Location: 9329-10556 bp Feature: domain Description: autotrans_barl Location: 9329-1 0556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDWF01000161.1 Shigella flexneri strain 4028STDY6274995 genome assembly, contig: ERS1017653SCcontig000161, whole genome shotgun sequence (6264 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1042 -1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2 12 1-2 2 95 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 5-312 0 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 32 14-3433 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWF01000167.1 Shigella flexneri strain 4028STDY6274995 genome assembly, contig: ERS1017653SCcontig000167, whole genome shotgun sequence (5862 bp)
Overview 1 RT 1: 3212-5833 bp Neighborhood of RT #1 [3212, 5859] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3212-3697 bp Feature: domain Description: COG3547 Location: 3230-3683 bp Feature: domain Description: COG3 547 Location: 3 23 0-3 683 bp Feature: gene Location: 3793-3960 bp Feature: gene Location: 3986-5203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4826 bp Feature: domain Description: GIIM Note: maturase Location: 4904-5126 bp Feature: domain Description: GIIM Note: maturase Location: 4904-5126 bp Feature: gene Location: 5214-5597 bp Feature: gene Location: 5680-5859 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683-5833 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683 -583 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDWF01000122.1 Shigella flexneri strain 4028STDY6274995 genome assembly, contig: ERS1017653SCcontig000122, whole genome shotgun sequence (10187 bp)
Overview 1 RT 1: 8520-10182 bp Neighborhood of RT #1 [8520, 10184] PHA02517 RVT-GII Feature: gene Location: 8520-8945 bp Feature: domain Description: PHA02517 Location: 8544-8880 bp Feature: domain Description: PHA02517 Location: 854 4 -8880 bp Feature: gene Location: 9158-9466 bp Feature: gene Location: 9498-10184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9924-10182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9924 -10182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII