myRT

myRT report for GCA_900486675.1_18787_4_83

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Seq: UDXA01000079.1 Shigella flexneri strain 4028STDY6274996 genome assembly, contig: ERS1017655SCcontig000079, whole genome shotgun sequence (17671 bp)
Overview 1 RT 1: 15021-17642 bp Neighborhood of RT #1 [15021, 17668] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 15021-15506 bp Feature: domain Description: COG3547 Location: 15039-15492 bp Feature: domain Description: COG3547 Location: 1 5039-1 5492 bp Feature: gene Location: 15602-15769 bp Feature: gene Location: 15795-17012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15981-16635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5981 -1 6635 bp Feature: domain Description: GIIM Note: maturase Location: 16713-16935 bp Feature: domain Description: GIIM Note: maturase Location: 1 671 3-1 6935 bp Feature: gene Location: 17023-17406 bp Feature: gene Location: 17489-17668 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17492-17642 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 7492-1 7642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDXA01000038.1 Shigella flexneri strain 4028STDY6274996 genome assembly, contig: ERS1017655SCcontig000038, whole genome shotgun sequence (38438 bp)
Overview 1 RT 1: 33356-36776 bp Neighborhood of RT #1 [33356, 36841] MFS_MdfA_MDR_like PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 33356-33613 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 33377-33587 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 33377-33587 bp Feature: gene Location: 33684-34130 bp Feature: domain Description: PHA02517 Location: 33687-34128 bp Feature: domain Description: PHA02 517 Location: 33687-3412 8 bp Feature: gene Location: 34247-35770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34520-35252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452 0-352 52 bp Feature: domain Description: GIIM Note: maturase Location: 35327-35525 bp Feature: domain Description: GIIM Note: maturase Location: 3532 7-3552 5 bp Feature: gene Location: 35724-36149 bp Feature: gene Location: 36362-36841 bp Feature: domain Description: PHA02517 Location: 36422-36776 bp Feature: domain Description: PHA02 517 Location: 3642 2 -36776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MdfA_MDR_like (cd17320), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDXA01000156.1 Shigella flexneri strain 4028STDY6274996 genome assembly, contig: ERS1017655SCcontig000156, whole genome shotgun sequence (6269 bp)
Overview 1 RT 1: 988-4123 bp Neighborhood of RT #1 [988, 4123] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 988-1737 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1063-1717 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1063 -1717 bp Feature: gene Location: 2133-2333 bp Feature: domain Description: Tra5 Location: 2142-2316 bp Feature: domain Description: Tra5 Location: 2142-23 16 bp Feature: gene Location: 2346-3149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646-3141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646-3 141 bp Feature: gene Location: 3202-3528 bp Feature: domain Description: GIIM Note: maturase Location: 3235-3454 bp Feature: domain Description: GIIM Note: maturase Location: 3 23 5-3 454 bp Feature: gene Location: 3881-4123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)