myRT

myRT report for GCA_900486695.1_18787_4_81

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Seq: UIPV01000091.1 Shigella flexneri strain 4028STDY6274994 genome assembly, contig: ERS1017651SCcontig000091, whole genome shotgun sequence (14114 bp)
Overview 1 RT 1: 1622-4956 bp Neighborhood of RT #1 [1622, 4991] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_ISL3 Feature: gene Location: 1622-1750 bp Feature: gene Location: 1798-2079 bp Feature: domain Description: PHA02517 Location: 1804-2014 bp Feature: domain Description: PHA0251 7 Location: 1 804-201 4 bp Feature: gene Location: 2671-4194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2944-3676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2944-3676 bp Feature: domain Description: GIIM Note: maturase Location: 3751-3949 bp Feature: domain Description: GIIM Note: maturase Location: 3751 -3949 bp Feature: gene Location: 4309-4758 bp Feature: domain Description: PHA02517 Location: 4486-4756 bp Feature: domain Description: PHA0251 7 Location: 4486-4756 bp Feature: gene Location: 4761-4991 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 4815-4956 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 481 5-4956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_ISL3 (pfam01610)

Seq: UIPV01000162.1 Shigella flexneri strain 4028STDY6274994 genome assembly, contig: ERS1017651SCcontig000162, whole genome shotgun sequence (5974 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIPV01000152.1 Shigella flexneri strain 4028STDY6274994 genome assembly, contig: ERS1017651SCcontig000152, whole genome shotgun sequence (7092 bp)
Overview 1 RT 1: 524-3659 bp Neighborhood of RT #1 [524, 3659] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 524-1273 bp Feature: domain Description: PAP2_acid_phosphatase Location: 599-1253 bp Feature: domain Description: PAP2_acid_phosphatase Location: 599-1253 bp Feature: gene Location: 1669-1869 bp Feature: domain Description: Tra5 Location: 1678-1852 bp Feature: domain Description: Tra5 Location: 1678-1852 bp Feature: gene Location: 1882-2685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2182-2677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2182-2677 bp Feature: gene Location: 2738-3064 bp Feature: domain Description: GIIM Note: maturase Location: 2771-2990 bp Feature: domain Description: GIIM Note: maturase Location: 2771-2990 bp Feature: gene Location: 3417-3659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)