myRT

myRT report for GCA_900486705.1_18787_4_68

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Seq: UDWK01000023.1 Shigella flexneri strain 4028STDY6274981 genome assembly, contig: ERS1017625SCcontig000023, whole genome shotgun sequence (53506 bp)
Overview 1 RT 1: 73-7798 bp Neighborhood of RT #1 [73, 7800] InsE RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 73-375 bp Feature: domain Description: InsE Location: 82-364 bp Feature: domain Description: InsE Location: 82-364 bp Feature: gene Location: 418-618 bp Feature: gene Location: 1431-2954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1704-2436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 704-2436 bp Feature: domain Description: GIIM Note: maturase Location: 2511-2709 bp Feature: domain Description: GIIM Note: maturase Location: 251 1 -2709 bp Feature: gene Location: 3131-3517 bp Feature: domain Description: PHA02517 Location: 3134-3515 bp Feature: domain Description: PHA0251 7 Location: 31 34-351 5 bp Feature: gene Location: 3682-7800 bp Feature: domain Description: ESPR Location: 3685-3754 bp Feature: domain Description: ESPR Location: 3685-3754 bp Feature: domain Description: Peptidase_S6 Location: 3835-6007 bp Feature: domain Description: Peptidase_S6 Location: 3835-6007 bp Feature: domain Description: autotrans_barl Location: 6571-7798 bp Feature: domain Description: autotrans_barl Location: 6571 -7798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), InsE (COG2963)

Seq: UDWK01000190.1 Shigella flexneri strain 4028STDY6274981 genome assembly, contig: ERS1017625SCcontig000190, whole genome shotgun sequence (4219 bp)
Overview 1 RT 1: 3-2038 bp Neighborhood of RT #1 [3, 2038] Tra5 RVT-GII GIIM Feature: gene Location: 3-248 bp Feature: domain Description: Tra5 Location: 9-231 bp Feature: domain Description: Tra5 Location: 9-2 31 bp Feature: gene Location: 261-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-1056 bp Feature: gene Location: 1117-1443 bp Feature: domain Description: GIIM Note: maturase Location: 1150-1369 bp Feature: domain Description: GIIM Note: maturase Location: 1150-1369 bp Feature: gene Location: 1796-2038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: UDWK01000164.1 Shigella flexneri strain 4028STDY6274981 genome assembly, contig: ERS1017625SCcontig000164, whole genome shotgun sequence (5958 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)