myRT

myRT report for GCA_900486715.1_18787_4_69

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Seq: UDWS01000022.1 Shigella flexneri strain 4028STDY6274982 genome assembly, contig: ERS1017627SCcontig000022, whole genome shotgun sequence (54250 bp)
Overview 1 RT 1: 46307-49697 bp Neighborhood of RT #1 [46307, 49699] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 46307-46435 bp Feature: gene Location: 46521-46760 bp Feature: domain Description: PHA02517 Location: 46524-46695 bp Feature: domain Description: PHA0251 7 Location: 46524-46695 bp Feature: gene Location: 47352-48875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47625-48357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47625-48357 bp Feature: domain Description: GIIM Note: maturase Location: 48432-48630 bp Feature: domain Description: GIIM Note: maturase Location: 48432-48630 bp Feature: gene Location: 48988-49314 bp Feature: gene Location: 49313-49699 bp Feature: domain Description: PHA02517 Location: 49316-49697 bp Feature: domain Description: PHA0251 7 Location: 4931 6-49697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDWS01000186.1 Shigella flexneri strain 4028STDY6274982 genome assembly, contig: ERS1017627SCcontig000186, whole genome shotgun sequence (4235 bp)
Overview 1 RT 1: 1-2054 bp Neighborhood of RT #1 [1, 2054] Tra5 RVT-GII GIIM Feature: gene Location: 1-264 bp Feature: domain Description: Tra5 Location: 4-247 bp Feature: domain Description: Tra5 Location: 4-2 47 bp Feature: gene Location: 277-1080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-1072 bp Feature: gene Location: 1133-1459 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1385 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1385 bp Feature: gene Location: 1812-2054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: UDWS01000083.1 Shigella flexneri strain 4028STDY6274982 genome assembly, contig: ERS1017627SCcontig000083, whole genome shotgun sequence (17950 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)