myRT

myRT report for GCA_900486725.1_18787_4_61

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Seq: UDWL01000160.1 Shigella flexneri strain 4028STDY6274974 genome assembly, contig: ERS1017611SCcontig000160, whole genome shotgun sequence (6245 bp)
Overview 1 RT 1: 520-3655 bp Neighborhood of RT #1 [520, 3655] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 520-1269 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1 249 bp Feature: gene Location: 1665-1865 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: domain Description: Tra5 Location: 1 674-1 848 bp Feature: gene Location: 1878-2681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 78-2673 bp Feature: gene Location: 2734-3060 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: gene Location: 3413-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWL01000153.1 Shigella flexneri strain 4028STDY6274974 genome assembly, contig: ERS1017611SCcontig000153, whole genome shotgun sequence (6877 bp)
Overview 1 RT 1: 4227-6848 bp Neighborhood of RT #1 [4227, 6874] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4227-4712 bp Feature: domain Description: COG3547 Location: 4245-4698 bp Feature: domain Description: COG3547 Location: 42 45-4698 bp Feature: gene Location: 4808-4975 bp Feature: gene Location: 5001-6218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187-5841 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: domain Description: GIIM Note: maturase Location: 5919-6141 bp Feature: gene Location: 6229-6612 bp Feature: gene Location: 6695-6874 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6698-6848 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6698-6848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDWL01000019.1 Shigella flexneri strain 4028STDY6274974 genome assembly, contig: ERS1017611SCcontig000019, whole genome shotgun sequence (54755 bp)
Overview 1 RT 1: 1608-9024 bp Neighborhood of RT #1 [1608, 9026] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1608-1736 bp Feature: gene Location: 1826-2065 bp Feature: domain Description: PHA02517 Location: 1829-2000 bp Feature: domain Description: PHA02517 Location: 1829-2000 bp Feature: gene Location: 2657-4180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 0-3 662 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: domain Description: GIIM Note: maturase Location: 3 73 7-3 93 5 bp Feature: gene Location: 4357-4743 bp Feature: domain Description: PHA02517 Location: 4360-4741 bp Feature: domain Description: PHA02517 Location: 43 60-4741 bp Feature: gene Location: 4908-9026 bp Feature: domain Description: ESPR Location: 4911-4980 bp Feature: domain Description: ESPR Location: 4911-4980 bp Feature: domain Description: Peptidase_S6 Location: 5061-7233 bp Feature: domain Description: Peptidase_S6 Location: 5061-723 3 bp Feature: domain Description: autotrans_barl Location: 7797-9024 bp Feature: domain Description: autotrans_barl Location: 7797-9024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)