myRT

myRT report for GCA_900486735.1_18787_4_67

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Seq: UDWI01000085.1 Shigella flexneri strain 4028STDY6274980 genome assembly, contig: ERS1017623SCcontig000085, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3547 Location: 1 4280-1 4733 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5222-1 5876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 1 5954-1 61 76 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWI01000120.1 Shigella flexneri strain 4028STDY6274980 genome assembly, contig: ERS1017623SCcontig000120, whole genome shotgun sequence (10468 bp)
Overview 1 RT 1: 1608-5556 bp Neighborhood of RT #1 [1608, 5618] PHA02517 RVT-GII GIIM PHA02517 INT_P4_C Feature: gene Location: 1608-1736 bp Feature: gene Location: 1826-2065 bp Feature: domain Description: PHA02517 Location: 1829-2000 bp Feature: domain Description: PHA02 517 Location: 182 9-2 000 bp Feature: gene Location: 2657-4180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 930-3662 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: gene Location: 4358-4762 bp Feature: domain Description: PHA02517 Location: 4361-4751 bp Feature: domain Description: PHA02 517 Location: 4361-4751 bp Feature: gene Location: 4869-5618 bp Feature: domain Description: INT_P4_C Location: 4974-5556 bp Feature: domain Description: INT_P4_C Location: 4974-5556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), INT_P4_C (cd00801)

Seq: UDWI01000094.1 Shigella flexneri strain 4028STDY6274980 genome assembly, contig: ERS1017623SCcontig000094, whole genome shotgun sequence (13854 bp)
Overview 1 RT 1: 3085-5786 bp Neighborhood of RT #1 [3085, 5806] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 3085-3240 bp Feature: gene Location: 3266-3637 bp Feature: domain Description: GIIM Note: maturase Location: 3344-3563 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 44-3 563 bp Feature: gene Location: 3645-4448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945-4440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 945-4440 bp Feature: gene Location: 4461-4661 bp Feature: domain Description: Tra5 Location: 4470-4644 bp Feature: domain Description: Tra5 Location: 4470-4644 bp Feature: gene Location: 5057-5806 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5132-5786 bp Feature: domain Description: PAP2_acid_phosphatase Location: 513 2-5786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)