myRT

myRT report for GCA_900486745.1_18787_4_63

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Seq: UEKZ01000083.1 Shigella flexneri strain 4028STDY6274976 genome assembly, contig: ERS1017615SCcontig000083, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UEKZ01000024.1 Shigella flexneri strain 4028STDY6274976 genome assembly, contig: ERS1017615SCcontig000024, whole genome shotgun sequence (53241 bp)
Overview 1 RT 1: 49487-52188 bp Neighborhood of RT #1 [49487, 52208] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 49487-49642 bp Feature: gene Location: 49668-50039 bp Feature: domain Description: GIIM Note: maturase Location: 49746-49965 bp Feature: domain Description: GIIM Note: maturase Location: 49746-49965 bp Feature: gene Location: 50047-50850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50347-50842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50347-50842 bp Feature: gene Location: 50863-51063 bp Feature: domain Description: Tra5 Location: 50872-51046 bp Feature: domain Description: Tra5 Location: 50872 -51046 bp Feature: gene Location: 51459-52208 bp Feature: domain Description: PAP2_acid_phosphatase Location: 51534-52188 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 51534-52 188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UEKZ01000022.1 Shigella flexneri strain 4028STDY6274976 genome assembly, contig: ERS1017615SCcontig000022, whole genome shotgun sequence (54744 bp)
Overview 1 RT 1: 1620-9036 bp Neighborhood of RT #1 [1620, 9038] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1620-1748 bp Feature: gene Location: 1838-2077 bp Feature: domain Description: PHA02517 Location: 1841-2012 bp Feature: domain Description: PHA02517 Location: 1841-2012 bp Feature: gene Location: 2669-4192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942-3674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942-3 674 bp Feature: domain Description: GIIM Note: maturase Location: 3749-3947 bp Feature: domain Description: GIIM Note: maturase Location: 3 749-3 947 bp Feature: gene Location: 4369-4755 bp Feature: domain Description: PHA02517 Location: 4372-4753 bp Feature: domain Description: PHA02517 Location: 43 72-4753 bp Feature: gene Location: 4920-9038 bp Feature: domain Description: ESPR Location: 4923-4992 bp Feature: domain Description: ESPR Location: 4923 -4992 bp Feature: domain Description: Peptidase_S6 Location: 5073-7245 bp Feature: domain Description: Peptidase_S6 Location: 5073 -7245 bp Feature: domain Description: autotrans_barl Location: 7809-9036 bp Feature: domain Description: autotrans_barl Location: 7809-903 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)