myRT

myRT report for GCA_900486755.1_18787_4_39

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Seq: UDWO01000123.1 Shigella flexneri strain 4028STDY6274952 genome assembly, contig: ERS1017581SCcontig000123, whole genome shotgun sequence (10120 bp)
Overview 1 RT 1: 1629-9784 bp Neighborhood of RT #1 [1629, 9804] PHA02517 RVT-GII GIIM PHA02517 ushA GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 1629-1757 bp Feature: gene Location: 1847-2086 bp Feature: domain Description: PHA02517 Location: 1850-2021 bp Feature: domain Description: PHA0251 7 Location: 1 850-2021 bp Feature: gene Location: 2678-4201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2951-3683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2951 -3683 bp Feature: domain Description: GIIM Note: maturase Location: 3758-3956 bp Feature: domain Description: GIIM Note: maturase Location: 3758-3956 bp Feature: gene Location: 4378-4764 bp Feature: domain Description: PHA02517 Location: 4381-4762 bp Feature: domain Description: PHA0251 7 Location: 4381 -4762 bp Feature: gene Location: 5105-6757 bp Feature: domain Description: ushA Location: 5117-6755 bp Feature: domain Description: ushA Location: 51 1 7-6755 bp Feature: gene Location: 7083-7238 bp Feature: gene Location: 7264-7635 bp Feature: domain Description: GIIM Note: maturase Location: 7342-7561 bp Feature: domain Description: GIIM Note: maturase Location: 7342-7561 bp Feature: gene Location: 7643-8446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7943-8438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7943-8438 bp Feature: gene Location: 8459-8659 bp Feature: domain Description: Tra5 Location: 8468-8642 bp Feature: domain Description: Tra5 Location: 8468-8642 bp Feature: gene Location: 9055-9804 bp Feature: domain Description: PAP2_acid_phosphatase Location: 9130-9784 bp Feature: domain Description: PAP2_acid_phosphatase Location: 91 30-9784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ushA (PRK09558), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDWO01000168.1 Shigella flexneri strain 4028STDY6274952 genome assembly, contig: ERS1017581SCcontig000168, whole genome shotgun sequence (5971 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)