myRT

myRT report for GCA_900486765.1_18787_4_65

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Seq: UDWN01000019.1 Shigella flexneri strain 4028STDY6274978 genome assembly, contig: ERS1017619SCcontig000019, whole genome shotgun sequence (57287 bp)
Overview 1 RT 1: 4163-11579 bp Neighborhood of RT #1 [4163, 11581] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 4163-4291 bp Feature: gene Location: 4381-4620 bp Feature: domain Description: PHA02517 Location: 4384-4555 bp Feature: domain Description: PHA0251 7 Location: 4384-4555 bp Feature: gene Location: 5212-6735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5485-6217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5485-621 7 bp Feature: domain Description: GIIM Note: maturase Location: 6292-6490 bp Feature: domain Description: GIIM Note: maturase Location: 6292-6490 bp Feature: gene Location: 6912-7298 bp Feature: domain Description: PHA02517 Location: 6915-7296 bp Feature: domain Description: PHA0251 7 Location: 691 5-7296 bp Feature: gene Location: 7463-11581 bp Feature: domain Description: ESPR Location: 7466-7535 bp Feature: domain Description: ESPR Location: 7466-7535 bp Feature: domain Description: Peptidase_S6 Location: 7616-9788 bp Feature: domain Description: Peptidase_S6 Location: 761 6-9788 bp Feature: domain Description: autotrans_barl Location: 10352-11579 bp Feature: domain Description: autotrans_barl Location: 1 0352-1 1 579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDWN01000170.1 Shigella flexneri strain 4028STDY6274978 genome assembly, contig: ERS1017619SCcontig000170, whole genome shotgun sequence (5630 bp)
Overview 1 RT 1: 325-3460 bp Neighborhood of RT #1 [325, 3460] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 325-1074 bp Feature: domain Description: PAP2_acid_phosphatase Location: 400-1054 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 400-1054 bp Feature: gene Location: 1470-1670 bp Feature: domain Description: Tra5 Location: 1479-1653 bp Feature: domain Description: Tra5 Location: 1479-1653 bp Feature: gene Location: 1683-2486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1983-2478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1983-2 478 bp Feature: gene Location: 2539-2865 bp Feature: domain Description: GIIM Note: maturase Location: 2572-2791 bp Feature: domain Description: GIIM Note: maturase Location: 2 572 -2 791 bp Feature: gene Location: 3218-3460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWN01000080.1 Shigella flexneri strain 4028STDY6274978 genome assembly, contig: ERS1017619SCcontig000080, whole genome shotgun sequence (17952 bp)
Overview 1 RT 1: 15197-17850 bp Neighborhood of RT #1 [15197, 17850] COG3547 RVT-GII GIIM Feature: gene Location: 15197-15682 bp Feature: domain Description: COG3547 Location: 15215-15668 bp Feature: domain Description: COG3 547 Location: 15215-15668 bp Feature: gene Location: 15778-15945 bp Feature: gene Location: 15971-17188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16157-16811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16157-16811 bp Feature: domain Description: GIIM Note: maturase Location: 16889-17111 bp Feature: domain Description: GIIM Note: maturase Location: 16889-17111 bp Feature: gene Location: 17199-17582 bp Feature: gene Location: 17656-17850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)