myRT

myRT report for GCA_900486775.1_18787_4_66

Download annotations/find similar RTs

Seq: UIPO01000081.1 Shigella flexneri strain 4028STDY6274979 genome assembly, contig: ERS1017621SCcontig000081, whole genome shotgun sequence (17123 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3547 Location: 1 4280-1 4733 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5222-1 5876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 1 5954-1 61 76 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIPO01000018.1 Shigella flexneri strain 4028STDY6274979 genome assembly, contig: ERS1017621SCcontig000018, whole genome shotgun sequence (56363 bp)
Overview 1 RT 1: 3239-10655 bp Neighborhood of RT #1 [3239, 10657] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA02 517 Location: 3460-3631 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-52 93 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: gene Location: 5988-6374 bp Feature: domain Description: PHA02517 Location: 5991-6372 bp Feature: domain Description: PHA02 517 Location: 5991-6372 bp Feature: gene Location: 6539-10657 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: ESPR Location: 6542 -6611 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: Peptidase_S6 Location: 6692 -8864 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Feature: domain Description: autotrans_barl Location: 942 8-10655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIPO01000088.1 Shigella flexneri strain 4028STDY6274979 genome assembly, contig: ERS1017621SCcontig000088, whole genome shotgun sequence (14899 bp)
Overview 1 RT 1: 2594-5295 bp Neighborhood of RT #1 [2594, 5315] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2594-2749 bp Feature: gene Location: 2775-3146 bp Feature: domain Description: GIIM Note: maturase Location: 2853-3072 bp Feature: domain Description: GIIM Note: maturase Location: 2853 -3 072 bp Feature: gene Location: 3154-3957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3454-3949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 454-3 949 bp Feature: gene Location: 3970-4170 bp Feature: domain Description: Tra5 Location: 3979-4153 bp Feature: domain Description: Tra5 Location: 3 979-4153 bp Feature: gene Location: 4566-5315 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4641-5295 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4641-5295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)