myRT

myRT report for GCA_900486785.1_18787_4_58

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Seq: UDXE01000038.1 Shigella flexneri strain 4028STDY6274971 genome assembly, contig: ERS1017605SCcontig000038, whole genome shotgun sequence (36954 bp)
Overview 1 RT 1: 29929-36951 bp Neighborhood of RT #1 [29929, 36951] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 29929-34047 bp Feature: domain Description: ESPR Location: 29932-30001 bp Feature: domain Description: ESPR Location: 29932-30001 bp Feature: domain Description: Peptidase_S6 Location: 30082-32254 bp Feature: domain Description: Peptidase_S6 Location: 30082-32254 bp Feature: domain Description: autotrans_barl Location: 32818-34045 bp Feature: domain Description: autotrans_barl Location: 3281 8-34045 bp Feature: gene Location: 34212-34598 bp Feature: domain Description: PHA02517 Location: 34215-34596 bp Feature: domain Description: PHA0251 7 Location: 3421 5-34596 bp Feature: gene Location: 34775-36298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35048-35780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35048-35780 bp Feature: domain Description: GIIM Note: maturase Location: 35855-36053 bp Feature: domain Description: GIIM Note: maturase Location: 35855-36053 bp Feature: gene Location: 36592-36951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDXE01000080.1 Shigella flexneri strain 4028STDY6274971 genome assembly, contig: ERS1017605SCcontig000080, whole genome shotgun sequence (18006 bp)
Overview 1 RT 1: 15251-17904 bp Neighborhood of RT #1 [15251, 17904] COG3547 RVT-GII GIIM Feature: gene Location: 15251-15736 bp Feature: domain Description: COG3547 Location: 15269-15722 bp Feature: domain Description: COG3547 Location: 152 69-1572 2 bp Feature: gene Location: 15832-15999 bp Feature: gene Location: 16025-17242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16211-16865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 11-16865 bp Feature: domain Description: GIIM Note: maturase Location: 16943-17165 bp Feature: domain Description: GIIM Note: maturase Location: 16943-17165 bp Feature: gene Location: 17253-17636 bp Feature: gene Location: 17710-17904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDXE01000171.1 Shigella flexneri strain 4028STDY6274971 genome assembly, contig: ERS1017605SCcontig000171, whole genome shotgun sequence (5641 bp)
Overview 1 RT 1: 343-3478 bp Neighborhood of RT #1 [343, 3478] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 343-1092 bp Feature: domain Description: PAP2_acid_phosphatase Location: 418-1072 bp Feature: domain Description: PAP2_acid_phosphatase Location: 418-1072 bp Feature: gene Location: 1488-1688 bp Feature: domain Description: Tra5 Location: 1497-1671 bp Feature: domain Description: Tra5 Location: 1497-1671 bp Feature: gene Location: 1701-2504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001-2496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001-2496 bp Feature: gene Location: 2557-2883 bp Feature: domain Description: GIIM Note: maturase Location: 2590-2809 bp Feature: domain Description: GIIM Note: maturase Location: 2590-2809 bp Feature: gene Location: 3236-3478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)