myRT

myRT report for GCA_900486795.1_18787_5_4

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Seq: UIPT01000118.1 Shigella flexneri strain 4028STDY6275013 genome assembly, contig: ERS1017602SCcontig000118, whole genome shotgun sequence (10897 bp)
Overview 1 RT 1: 317-3452 bp Neighborhood of RT #1 [317, 3452] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 317-1066 bp Feature: domain Description: PAP2_acid_phosphatase Location: 392-1046 bp Feature: domain Description: PAP2_acid_phosphatase Location: 392-1 046 bp Feature: gene Location: 1462-1662 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: domain Description: Tra5 Location: 1 471 -1 645 bp Feature: gene Location: 1675-2478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 975-2470 bp Feature: gene Location: 2531-2857 bp Feature: domain Description: GIIM Note: maturase Location: 2564-2783 bp Feature: domain Description: GIIM Note: maturase Location: 2564-2783 bp Feature: gene Location: 3210-3452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UIPT01000032.1 Shigella flexneri strain 4028STDY6275013 genome assembly, contig: ERS1017602SCcontig000032, whole genome shotgun sequence (39109 bp)
Overview 1 RT 1: 3150-10566 bp Neighborhood of RT #1 [3150, 10568] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3150-3278 bp Feature: gene Location: 3368-3607 bp Feature: domain Description: PHA02517 Location: 3371-3542 bp Feature: domain Description: PHA02 517 Location: 3371-3542 bp Feature: gene Location: 4199-5722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472-5204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472 -52 04 bp Feature: domain Description: GIIM Note: maturase Location: 5279-5477 bp Feature: domain Description: GIIM Note: maturase Location: 52 79-5477 bp Feature: gene Location: 5899-6285 bp Feature: domain Description: PHA02517 Location: 5902-6283 bp Feature: domain Description: PHA02 517 Location: 5902 -62 83 bp Feature: gene Location: 6450-10568 bp Feature: domain Description: ESPR Location: 6453-6522 bp Feature: domain Description: ESPR Location: 6453-652 2 bp Feature: domain Description: Peptidase_S6 Location: 6603-8775 bp Feature: domain Description: Peptidase_S6 Location: 6603-8775 bp Feature: domain Description: autotrans_barl Location: 9339-10566 bp Feature: domain Description: autotrans_barl Location: 9339-10566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIPT01000159.1 Shigella flexneri strain 4028STDY6275013 genome assembly, contig: ERS1017602SCcontig000159, whole genome shotgun sequence (6982 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)