myRT

myRT report for GCA_900486805.1_18787_5_2

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Seq: UDWP01000166.1 Shigella flexneri strain 4028STDY6275011 genome assembly, contig: ERS1017598SCcontig000166, whole genome shotgun sequence (5970 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWP01000124.1 Shigella flexneri strain 4028STDY6275011 genome assembly, contig: ERS1017598SCcontig000124, whole genome shotgun sequence (10126 bp)
Overview 1 RT 1: 334-8268 bp Neighborhood of RT #1 [334, 8333] PAP2_acid_phosphatase Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 334-1083 bp Feature: domain Description: PAP2_acid_phosphatase Location: 409-1063 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 409-1063 bp Feature: gene Location: 1479-1679 bp Feature: domain Description: Tra5 Location: 1488-1662 bp Feature: domain Description: Tra5 Location: 1488-1662 bp Feature: gene Location: 1692-2495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1992-2487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1992 -2 487 bp Feature: gene Location: 2548-2874 bp Feature: domain Description: GIIM Note: maturase Location: 2581-2800 bp Feature: domain Description: GIIM Note: maturase Location: 2 581-2 800 bp Feature: gene Location: 3227-3469 bp Feature: gene Location: 3381-5033 bp Feature: domain Description: ushA Location: 3393-5031 bp Feature: domain Description: ushA Location: 3393-5031 bp Feature: gene Location: 5374-5820 bp Feature: domain Description: PHA02517 Location: 5377-5818 bp Feature: domain Description: PHA02 517 Location: 5377-5818 bp Feature: gene Location: 5937-7460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6210-6942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 10-6942 bp Feature: domain Description: GIIM Note: maturase Location: 7017-7215 bp Feature: domain Description: GIIM Note: maturase Location: 7017-72 15 bp Feature: gene Location: 7414-7839 bp Feature: gene Location: 8052-8333 bp Feature: domain Description: PHA02517 Location: 8058-8268 bp Feature: domain Description: PHA02 517 Location: 8058-82 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)