myRT

myRT report for GCA_900486815.1_18787_5_3

Download annotations/find similar RTs

Seq: UDWQ01000075.1 Shigella flexneri strain 4028STDY6275012 genome assembly, contig: ERS1017600SCcontig000075, whole genome shotgun sequence (20413 bp)
Overview 1 RT 1: 17491-20144 bp Neighborhood of RT #1 [17491, 20144] COG3547 RVT-GII GIIM Feature: gene Location: 17491-17976 bp Feature: domain Description: COG3547 Location: 17509-17962 bp Feature: domain Description: COG3547 Location: 1 7509-1 7962 bp Feature: gene Location: 18072-18239 bp Feature: gene Location: 18265-19482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18451-19105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8451 -1 91 05 bp Feature: domain Description: GIIM Note: maturase Location: 19183-19405 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 83-1 9405 bp Feature: gene Location: 19493-19876 bp Feature: gene Location: 19950-20144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWQ01000023.1 Shigella flexneri strain 4028STDY6275012 genome assembly, contig: ERS1017600SCcontig000023, whole genome shotgun sequence (54783 bp)
Overview 1 RT 1: 1659-9075 bp Neighborhood of RT #1 [1659, 9077] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1659-1787 bp Feature: gene Location: 1877-2116 bp Feature: domain Description: PHA02517 Location: 1880-2051 bp Feature: domain Description: PHA02 517 Location: 1880-2 051 bp Feature: gene Location: 2708-4231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981-3713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 981-3713 bp Feature: domain Description: GIIM Note: maturase Location: 3788-3986 bp Feature: domain Description: GIIM Note: maturase Location: 3788-3986 bp Feature: gene Location: 4408-4794 bp Feature: domain Description: PHA02517 Location: 4411-4792 bp Feature: domain Description: PHA02 517 Location: 4411-4792 bp Feature: gene Location: 4959-9077 bp Feature: domain Description: ESPR Location: 4962-5031 bp Feature: domain Description: ESPR Location: 4962 -5031 bp Feature: domain Description: Peptidase_S6 Location: 5112-7284 bp Feature: domain Description: Peptidase_S6 Location: 5112 -72 84 bp Feature: domain Description: autotrans_barl Location: 7848-9075 bp Feature: domain Description: autotrans_barl Location: 7848-9075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDWQ01000085.1 Shigella flexneri strain 4028STDY6275012 genome assembly, contig: ERS1017600SCcontig000085, whole genome shotgun sequence (15149 bp)
Overview 1 RT 1: 8043-11178 bp Neighborhood of RT #1 [8043, 11178] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 8043-8792 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8118-8772 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8118-8772 bp Feature: gene Location: 9188-9388 bp Feature: domain Description: Tra5 Location: 9197-9371 bp Feature: domain Description: Tra5 Location: 9197-93 71 bp Feature: gene Location: 9401-10204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9701-10196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9701-10196 bp Feature: gene Location: 10257-10583 bp Feature: domain Description: GIIM Note: maturase Location: 10290-10509 bp Feature: domain Description: GIIM Note: maturase Location: 10290-10509 bp Feature: gene Location: 10936-11178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII