myRT

myRT report for GCA_900486845.1_18787_4_70

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Seq: UDWT01000079.1 Shigella flexneri strain 4028STDY6274983 genome assembly, contig: ERS1017629SCcontig000079, whole genome shotgun sequence (17920 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWT01000132.1 Shigella flexneri strain 4028STDY6274983 genome assembly, contig: ERS1017629SCcontig000132, whole genome shotgun sequence (9035 bp)
Overview 1 RT 1: 534-9021 bp Neighborhood of RT #1 [534, 9032] PAP2_acid_phosphatase Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM InsE Feature: gene Location: 534-1283 bp Feature: domain Description: PAP2_acid_phosphatase Location: 609-1263 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 609-12 63 bp Feature: gene Location: 1679-1879 bp Feature: domain Description: Tra5 Location: 1688-1862 bp Feature: domain Description: Tra5 Location: 1688-1862 bp Feature: gene Location: 1892-2695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2192-2687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 192 -2 687 bp Feature: gene Location: 2748-3074 bp Feature: domain Description: GIIM Note: maturase Location: 2781-3000 bp Feature: domain Description: GIIM Note: maturase Location: 2 781-3000 bp Feature: gene Location: 3427-3669 bp Feature: gene Location: 3581-5233 bp Feature: domain Description: ushA Location: 3593-5231 bp Feature: domain Description: ushA Location: 3593-52 31 bp Feature: gene Location: 5574-6020 bp Feature: domain Description: PHA02517 Location: 5577-6018 bp Feature: domain Description: PHA02 517 Location: 5577-6018 bp Feature: gene Location: 6137-7660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6410-7142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6410-7142 bp Feature: domain Description: GIIM Note: maturase Location: 7217-7415 bp Feature: domain Description: GIIM Note: maturase Location: 72 17-7415 bp Feature: gene Location: 7954-8565 bp Feature: gene Location: 8706-9032 bp Feature: domain Description: InsE Location: 8730-9021 bp Feature: domain Description: InsE Location: 8730-902 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)