myRT

myRT report for GCA_900486855.1_18787_5_6

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Seq: UDWX01000133.1 Shigella flexneri strain 4028STDY6275015 genome assembly, contig: ERS1017606SCcontig000133, whole genome shotgun sequence (9201 bp)
Overview 1 RT 1: 1575-8991 bp Neighborhood of RT #1 [1575, 8993] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1575-1703 bp Feature: gene Location: 1793-2032 bp Feature: domain Description: PHA02517 Location: 1796-1967 bp Feature: domain Description: PHA0251 7 Location: 1 796-1 967 bp Feature: gene Location: 2624-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3629 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: gene Location: 4324-4710 bp Feature: domain Description: PHA02517 Location: 4327-4708 bp Feature: domain Description: PHA0251 7 Location: 4327-4708 bp Feature: gene Location: 4875-8993 bp Feature: domain Description: ESPR Location: 4878-4947 bp Feature: domain Description: ESPR Location: 4878-4947 bp Feature: domain Description: Peptidase_S6 Location: 5028-7200 bp Feature: domain Description: Peptidase_S6 Location: 5028-7200 bp Feature: domain Description: autotrans_barl Location: 7764-8991 bp Feature: domain Description: autotrans_barl Location: 7764-8991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDWX01000083.1 Shigella flexneri strain 4028STDY6275015 genome assembly, contig: ERS1017606SCcontig000083, whole genome shotgun sequence (16981 bp)
Overview 1 RT 1: 14226-16879 bp Neighborhood of RT #1 [14226, 16879] COG3547 RVT-GII GIIM Feature: gene Location: 14226-14711 bp Feature: domain Description: COG3547 Location: 14244-14697 bp Feature: domain Description: COG3547 Location: 142 44-14697 bp Feature: gene Location: 14807-14974 bp Feature: gene Location: 15000-16217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15186-15840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15186-15840 bp Feature: domain Description: GIIM Note: maturase Location: 15918-16140 bp Feature: domain Description: GIIM Note: maturase Location: 15918-16140 bp Feature: gene Location: 16228-16611 bp Feature: gene Location: 16685-16879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWX01000165.1 Shigella flexneri strain 4028STDY6275015 genome assembly, contig: ERS1017606SCcontig000165, whole genome shotgun sequence (5896 bp)
Overview 1 RT 1: 517-3652 bp Neighborhood of RT #1 [517, 3652] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 517-1266 bp Feature: domain Description: PAP2_acid_phosphatase Location: 592-1246 bp Feature: domain Description: PAP2_acid_phosphatase Location: 592-1246 bp Feature: gene Location: 1662-1862 bp Feature: domain Description: Tra5 Location: 1671-1845 bp Feature: domain Description: Tra5 Location: 1671-1845 bp Feature: gene Location: 1875-2678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175-2670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175-2670 bp Feature: gene Location: 2731-3057 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2983 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2983 bp Feature: gene Location: 3410-3652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)