myRT

myRT report for GCA_900486865.1_18787_5_19

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Seq: UDWZ01000030.1 Shigella flexneri strain 4028STDY6275028 genome assembly, contig: ERS1017632SCcontig000030, whole genome shotgun sequence (41145 bp)
Overview 1 RT 1: 37804-41142 bp Neighborhood of RT #1 [37804, 41142] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM Feature: gene Location: 37804-38163 bp Feature: domain Description: DDE_Tnp_IS66 Location: 37813-38008 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3781 3-38008 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 38032-38140 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 38032-381 40 bp Feature: gene Location: 38280-38849 bp Feature: domain Description: PHA02517 Location: 38283-38688 bp Feature: domain Description: PHA0251 7 Location: 38283-38688 bp Feature: gene Location: 38966-40489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39239-39971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39239-39971 bp Feature: domain Description: GIIM Note: maturase Location: 40046-40244 bp Feature: domain Description: GIIM Note: maturase Location: 40046-40244 bp Feature: gene Location: 40783-41142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDWZ01000153.1 Shigella flexneri strain 4028STDY6275028 genome assembly, contig: ERS1017632SCcontig000153, whole genome shotgun sequence (7027 bp)
Overview 1 RT 1: 4272-6925 bp Neighborhood of RT #1 [4272, 6925] COG3547 RVT-GII GIIM Feature: gene Location: 4272-4757 bp Feature: domain Description: COG3547 Location: 4290-4743 bp Feature: domain Description: COG3547 Location: 42 90-4743 bp Feature: gene Location: 4853-5020 bp Feature: gene Location: 5046-6263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5232-5886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 32 -5886 bp Feature: domain Description: GIIM Note: maturase Location: 5964-6186 bp Feature: domain Description: GIIM Note: maturase Location: 5964-6186 bp Feature: gene Location: 6274-6657 bp Feature: gene Location: 6731-6925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWZ01000170.1 Shigella flexneri strain 4028STDY6275028 genome assembly, contig: ERS1017632SCcontig000170, whole genome shotgun sequence (5596 bp)
Overview 1 RT 1: 315-3450 bp Neighborhood of RT #1 [315, 3450] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 315-1064 bp Feature: domain Description: PAP2_acid_phosphatase Location: 390-1044 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 90-1044 bp Feature: gene Location: 1460-1660 bp Feature: domain Description: Tra5 Location: 1469-1643 bp Feature: domain Description: Tra5 Location: 1469-1643 bp Feature: gene Location: 1673-2476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973 -2468 bp Feature: gene Location: 2529-2855 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2781 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2781 bp Feature: gene Location: 3208-3450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)