myRT

myRT report for GCA_900486885.1_18787_4_94

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Seq: UDWV01000004.1 Shigella flexneri strain 4028STDY6275007 genome assembly, contig: ERS1017677SCcontig000004, whole genome shotgun sequence (78381 bp)
Overview 1 RT 1: 156-2741 bp Neighborhood of RT #1 [156, 2755] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 156-287 bp Feature: domain Description: DDE_Tnp_IS66 Location: 168-261 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 68-261 bp Feature: gene Location: 848-1981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1 604 bp Feature: domain Description: GIIM Note: maturase Location: 1682-1904 bp Feature: domain Description: GIIM Note: maturase Location: 1 682-1 904 bp Feature: gene Location: 2097-2243 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2109-2220 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 09-2220 bp Feature: gene Location: 2270-2755 bp Feature: domain Description: COG3547 Location: 2288-2741 bp Feature: domain Description: COG3547 Location: 2288-2741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWV01000015.1 Shigella flexneri strain 4028STDY6275007 genome assembly, contig: ERS1017677SCcontig000015, whole genome shotgun sequence (62180 bp)
Overview 1 RT 1: 563-5562 bp Neighborhood of RT #1 [563, 5573] InsE PHA02517 RVT-GII GIIM PHA02517 YfaS Feature: gene Location: 563-865 bp Feature: domain Description: InsE Location: 572-854 bp Feature: domain Description: InsE Location: 572 -854 bp Feature: gene Location: 892-1317 bp Feature: domain Description: PHA02517 Location: 916-1252 bp Feature: domain Description: PHA02 517 Location: 916-12 52 bp Feature: gene Location: 1909-3432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2182-2914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 182 -2 914 bp Feature: domain Description: GIIM Note: maturase Location: 2989-3187 bp Feature: domain Description: GIIM Note: maturase Location: 2 989-3187 bp Feature: gene Location: 3613-4017 bp Feature: domain Description: PHA02517 Location: 3616-4006 bp Feature: domain Description: PHA02 517 Location: 3616-4006 bp Feature: gene Location: 4011-5573 bp Feature: domain Description: YfaS Location: 4023-5562 bp Feature: domain Description: YfaS Location: 402 3-5562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), YfaS (COG2373), InsE (COG2963)

Seq: UDWV01000138.1 Shigella flexneri strain 4028STDY6275007 genome assembly, contig: ERS1017677SCcontig000138, whole genome shotgun sequence (8269 bp)
Overview 1 RT 1: 1161-4296 bp Neighborhood of RT #1 [1161, 4296] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1161-1910 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1236-1890 bp Feature: domain Description: PAP2_acid_phosphatase Location: 123 6-1890 bp Feature: gene Location: 2306-2506 bp Feature: domain Description: Tra5 Location: 2315-2489 bp Feature: domain Description: Tra5 Location: 23 15-2489 bp Feature: gene Location: 2519-3322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2819-3314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2819-3 3 14 bp Feature: gene Location: 3375-3701 bp Feature: domain Description: GIIM Note: maturase Location: 3408-3627 bp Feature: domain Description: GIIM Note: maturase Location: 3 408-3 627 bp Feature: gene Location: 4054-4296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)