myRT

myRT report for GCA_900486895.1_18787_5_43

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Seq: UIPZ01000082.1 Shigella flexneri strain 4028STDY6275052 genome assembly, contig: ERS1017679SCcontig000082, whole genome shotgun sequence (17951 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIPZ01000107.1 Shigella flexneri strain 4028STDY6275052 genome assembly, contig: ERS1017679SCcontig000107, whole genome shotgun sequence (12245 bp)
Overview 1 RT 1: 1679-10391 bp Neighborhood of RT #1 [1679, 10456] PRK08943 HTH_Tnp_1 PHA02517 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1679-2623 bp Feature: domain Description: PRK08943 Location: 1682-2618 bp Feature: domain Description: PRK08943 Location: 1682 -2 618 bp Feature: gene Location: 2804-3802 bp Feature: domain Description: HTH_Tnp_1 Location: 2813-3026 bp Feature: domain Description: HTH_Tnp_1 Location: 2 813-302 6 bp Feature: domain Description: PHA02517 Location: 3140-3785 bp Feature: domain Description: PHA02 517 Location: 3140-3785 bp Feature: gene Location: 3815-4618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4115-4610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4115-4610 bp Feature: gene Location: 4671-4997 bp Feature: domain Description: GIIM Note: maturase Location: 4704-4923 bp Feature: domain Description: GIIM Note: maturase Location: 4704-492 3 bp Feature: gene Location: 5350-5592 bp Feature: gene Location: 5504-7156 bp Feature: domain Description: ushA Location: 5516-7154 bp Feature: domain Description: ushA Location: 5516-7154 bp Feature: gene Location: 7497-7943 bp Feature: domain Description: PHA02517 Location: 7500-7941 bp Feature: domain Description: PHA02 517 Location: 7500-7941 bp Feature: gene Location: 8060-9583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8333-9065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8333-9065 bp Feature: domain Description: GIIM Note: maturase Location: 9140-9338 bp Feature: domain Description: GIIM Note: maturase Location: 9140-9338 bp Feature: gene Location: 9537-9962 bp Feature: gene Location: 10175-10456 bp Feature: domain Description: PHA02517 Location: 10181-10391 bp Feature: domain Description: PHA02 517 Location: 10181-10391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ushA (PRK09558)