myRT

myRT report for GCA_900486905.1_18787_5_40

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Seq: UDXC01000077.1 Shigella flexneri strain 4028STDY6275049 genome assembly, contig: ERS1017675SCcontig000077, whole genome shotgun sequence (19677 bp)
Overview 1 RT 1: 17643-19674 bp Neighborhood of RT #1 [17643, 19676] InsE PHA02517 RVT-GII Feature: gene Location: 17643-17945 bp Feature: domain Description: InsE Location: 17682-17931 bp Feature: domain Description: InsE Location: 1 7682-1 7931 bp Feature: gene Location: 18001-18426 bp Feature: domain Description: PHA02517 Location: 18025-18361 bp Feature: domain Description: PHA0251 7 Location: 1 8025-1 8361 bp Feature: gene Location: 19308-19676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19416-19674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 941 6-1 9674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: UDXC01000018.1 Shigella flexneri strain 4028STDY6275049 genome assembly, contig: ERS1017675SCcontig000018, whole genome shotgun sequence (58084 bp)
Overview 1 RT 1: 4663-12376 bp Neighborhood of RT #1 [4663, 12378] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 4663-4965 bp Feature: domain Description: InsE Location: 4672-4954 bp Feature: domain Description: InsE Location: 4672 -4954 bp Feature: gene Location: 4992-5417 bp Feature: domain Description: PHA02517 Location: 5016-5352 bp Feature: domain Description: PHA02 517 Location: 5016-5352 bp Feature: gene Location: 6009-7532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6282-7014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 82 -7014 bp Feature: domain Description: GIIM Note: maturase Location: 7089-7287 bp Feature: domain Description: GIIM Note: maturase Location: 7089-72 87 bp Feature: gene Location: 7709-8095 bp Feature: domain Description: PHA02517 Location: 7712-8093 bp Feature: domain Description: PHA02 517 Location: 7712 -8093 bp Feature: gene Location: 8260-12378 bp Feature: domain Description: ESPR Location: 8263-8332 bp Feature: domain Description: ESPR Location: 82 63-8332 bp Feature: domain Description: Peptidase_S6 Location: 8413-10585 bp Feature: domain Description: Peptidase_S6 Location: 8413-10585 bp Feature: domain Description: autotrans_barl Location: 11149-12376 bp Feature: domain Description: autotrans_barl Location: 11149-12 376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDXC01000140.1 Shigella flexneri strain 4028STDY6275049 genome assembly, contig: ERS1017675SCcontig000140, whole genome shotgun sequence (8055 bp)
Overview 1 RT 1: 2793-5928 bp Neighborhood of RT #1 [2793, 5928] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 2793-3542 bp Feature: domain Description: PAP2_acid_phosphatase Location: 2868-3522 bp Feature: domain Description: PAP2_acid_phosphatase Location: 2868-3 522 bp Feature: gene Location: 3938-4138 bp Feature: domain Description: Tra5 Location: 3947-4121 bp Feature: domain Description: Tra5 Location: 3 947-4121 bp Feature: gene Location: 4151-4954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4451-4946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4451-4946 bp Feature: gene Location: 5007-5333 bp Feature: domain Description: GIIM Note: maturase Location: 5040-5259 bp Feature: domain Description: GIIM Note: maturase Location: 5040-5259 bp Feature: gene Location: 5686-5928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDXC01000166.1 Shigella flexneri strain 4028STDY6275049 genome assembly, contig: ERS1017675SCcontig000166, whole genome shotgun sequence (5857 bp)
Overview 1 RT 1: 3207-5828 bp Neighborhood of RT #1 [3207, 5854] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3207-3692 bp Feature: domain Description: COG3547 Location: 3225-3678 bp Feature: domain Description: COG354 7 Location: 3225-3678 bp Feature: gene Location: 3788-3955 bp Feature: gene Location: 3981-5198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4167-4821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 167-4 821 bp Feature: domain Description: GIIM Note: maturase Location: 4899-5121 bp Feature: domain Description: GIIM Note: maturase Location: 4 899-5121 bp Feature: gene Location: 5209-5592 bp Feature: gene Location: 5675-5854 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5678-5828 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5678-5828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)