myRT

myRT report for GCA_900486915.1_18787_4_87

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Seq: UIPR01000134.1 Shigella flexneri strain 4028STDY6275000 genome assembly, contig: ERS1017663SCcontig000134, whole genome shotgun sequence (8677 bp)
Overview 1 RT 1: 140-2727 bp Neighborhood of RT #1 [140, 2741] DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66_C COG3547 Feature: gene Location: 140-271 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152-245 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 52-245 bp Feature: gene Location: 833-1861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 935-1589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 935-1 589 bp Feature: gene Location: 2083-2229 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2095-2206 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2095-2206 bp Feature: gene Location: 2256-2741 bp Feature: domain Description: COG3547 Location: 2274-2727 bp Feature: domain Description: COG3547 Location: 2274-2727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII

Seq: UIPR01000097.1 Shigella flexneri strain 4028STDY6275000 genome assembly, contig: ERS1017663SCcontig000097, whole genome shotgun sequence (15961 bp)
Overview 1 RT 1: 12335-15626 bp Neighborhood of RT #1 [12335, 15646] group_II_RT_mat RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 12335-12862 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12344-12758 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12 344-12 758 bp Feature: gene Location: 12872-13144 bp Feature: gene Location: 13161-14288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13461-14118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13461-14118 bp Feature: gene Location: 14301-14501 bp Feature: domain Description: Tra5 Location: 14310-14484 bp Feature: domain Description: Tra5 Location: 14310-14484 bp Feature: gene Location: 14897-15646 bp Feature: domain Description: PAP2_acid_phosphatase Location: 14972-15626 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 14972 -1562 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UIPR01000127.1 Shigella flexneri strain 4028STDY6275000 genome assembly, contig: ERS1017663SCcontig000127, whole genome shotgun sequence (9480 bp)
Overview 1 RT 1: 1575-8991 bp Neighborhood of RT #1 [1575, 8993] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1575-1703 bp Feature: gene Location: 1793-2032 bp Feature: domain Description: PHA02517 Location: 1796-1967 bp Feature: domain Description: PHA02517 Location: 1796-1967 bp Feature: gene Location: 2624-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3 629 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: domain Description: GIIM Note: maturase Location: 3 704-3 902 bp Feature: gene Location: 4324-4710 bp Feature: domain Description: PHA02517 Location: 4327-4708 bp Feature: domain Description: PHA02517 Location: 43 27-4708 bp Feature: gene Location: 4875-8993 bp Feature: domain Description: ESPR Location: 4878-4947 bp Feature: domain Description: ESPR Location: 4878-4947 bp Feature: domain Description: Peptidase_S6 Location: 5028-7200 bp Feature: domain Description: Peptidase_S6 Location: 5028-7200 bp Feature: domain Description: autotrans_barl Location: 7764-8991 bp Feature: domain Description: autotrans_barl Location: 7764-8991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)