myRT

myRT report for GCA_900486925.1_18787_4_91

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Seq: UDWW01000079.1 Shigella flexneri strain 4028STDY6275004 genome assembly, contig: ERS1017670SCcontig000079, whole genome shotgun sequence (16981 bp)
Overview 1 RT 1: 14227-16880 bp Neighborhood of RT #1 [14227, 16880] COG3547 RVT-GII GIIM Feature: gene Location: 14227-14712 bp Feature: domain Description: COG3547 Location: 14245-14698 bp Feature: domain Description: COG3547 Location: 1 4245-1 4698 bp Feature: gene Location: 14808-14975 bp Feature: gene Location: 15001-16218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15187-15841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 87-1 5841 bp Feature: domain Description: GIIM Note: maturase Location: 15919-16141 bp Feature: domain Description: GIIM Note: maturase Location: 1 591 9-1 61 41 bp Feature: gene Location: 16229-16612 bp Feature: gene Location: 16686-16880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDWW01000162.1 Shigella flexneri strain 4028STDY6275004 genome assembly, contig: ERS1017670SCcontig000162, whole genome shotgun sequence (5675 bp)
Overview 1 RT 1: 413-3548 bp Neighborhood of RT #1 [413, 3548] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 413-1162 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 488-1142 bp Feature: gene Location: 1558-1758 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: gene Location: 1771-2574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 071-2 566 bp Feature: gene Location: 2627-2953 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: domain Description: GIIM Note: maturase Location: 2 660-2 879 bp Feature: gene Location: 3306-3548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWW01000023.1 Shigella flexneri strain 4028STDY6275004 genome assembly, contig: ERS1017670SCcontig000023, whole genome shotgun sequence (54729 bp)
Overview 1 RT 1: 1605-9021 bp Neighborhood of RT #1 [1605, 9023] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1605-1733 bp Feature: gene Location: 1823-2062 bp Feature: domain Description: PHA02517 Location: 1826-1997 bp Feature: domain Description: PHA02517 Location: 1826-1997 bp Feature: gene Location: 2654-4177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2927-3659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2927-3 659 bp Feature: domain Description: GIIM Note: maturase Location: 3734-3932 bp Feature: domain Description: GIIM Note: maturase Location: 3 73 4-3 93 2 bp Feature: gene Location: 4354-4740 bp Feature: domain Description: PHA02517 Location: 4357-4738 bp Feature: domain Description: PHA02517 Location: 43 57-473 8 bp Feature: gene Location: 4905-9023 bp Feature: domain Description: ESPR Location: 4908-4977 bp Feature: domain Description: ESPR Location: 4908-4977 bp Feature: domain Description: Peptidase_S6 Location: 5058-7230 bp Feature: domain Description: Peptidase_S6 Location: 5058-723 0 bp Feature: domain Description: autotrans_barl Location: 7794-9021 bp Feature: domain Description: autotrans_barl Location: 7794-9021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)