myRT

myRT report for GCA_900486945.1_18787_4_89

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Seq: UDXB01000153.1 Shigella flexneri strain 4028STDY6275002 genome assembly, contig: ERS1017667SCcontig000153, whole genome shotgun sequence (7271 bp)
Overview 1 RT 1: 2347-5090 bp Neighborhood of RT #1 [2347, 5090] group_II_RT_mat Tra5 RVT-GII GIIM Feature: gene Location: 2347-2682 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2479-2641 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2479-2641 bp Feature: gene Location: 3100-3300 bp Feature: domain Description: Tra5 Location: 3109-3283 bp Feature: domain Description: Tra5 Location: 31 09-3283 bp Feature: gene Location: 3313-4116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3613-4108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 3-41 08 bp Feature: gene Location: 4169-4495 bp Feature: domain Description: GIIM Note: maturase Location: 4202-4421 bp Feature: domain Description: GIIM Note: maturase Location: 4202-4421 bp Feature: gene Location: 4848-5090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDXB01000018.1 Shigella flexneri strain 4028STDY6275002 genome assembly, contig: ERS1017667SCcontig000018, whole genome shotgun sequence (56315 bp)
Overview 1 RT 1: 3191-10607 bp Neighborhood of RT #1 [3191, 10609] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3191-3319 bp Feature: gene Location: 3409-3648 bp Feature: domain Description: PHA02517 Location: 3412-3583 bp Feature: domain Description: PHA02 517 Location: 3412 -3583 bp Feature: gene Location: 4240-5763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4513-5245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4513-52 45 bp Feature: domain Description: GIIM Note: maturase Location: 5320-5518 bp Feature: domain Description: GIIM Note: maturase Location: 532 0-5518 bp Feature: gene Location: 5940-6326 bp Feature: domain Description: PHA02517 Location: 5943-6324 bp Feature: domain Description: PHA02 517 Location: 5943-632 4 bp Feature: gene Location: 6491-10609 bp Feature: domain Description: ESPR Location: 6494-6563 bp Feature: domain Description: ESPR Location: 6494-6563 bp Feature: domain Description: Peptidase_S6 Location: 6644-8816 bp Feature: domain Description: Peptidase_S6 Location: 6644-8816 bp Feature: domain Description: autotrans_barl Location: 9380-10607 bp Feature: domain Description: autotrans_barl Location: 9380-10607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDXB01000156.1 Shigella flexneri strain 4028STDY6275002 genome assembly, contig: ERS1017667SCcontig000156, whole genome shotgun sequence (7026 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)