myRT

myRT report for GCA_900486955.1_18787_5_11

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Seq: UDXD01000154.1 Shigella flexneri strain 4028STDY6275020 genome assembly, contig: ERS1017616SCcontig000154, whole genome shotgun sequence (6982 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDXD01000115.1 Shigella flexneri strain 4028STDY6275020 genome assembly, contig: ERS1017616SCcontig000115, whole genome shotgun sequence (11019 bp)
Overview 1 RT 1: 317-9171 bp Neighborhood of RT #1 [317, 9236] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 317-1066 bp Feature: domain Description: PAP2_acid_phosphatase Location: 392-1046 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 392 -1046 bp Feature: gene Location: 1462-1662 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: gene Location: 1675-2133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2 119 bp Feature: gene Location: 2382-2582 bp Feature: domain Description: Tra5 Location: 2391-2565 bp Feature: domain Description: Tra5 Location: 2 391-2 565 bp Feature: gene Location: 2595-3398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2895-3390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 895-3390 bp Feature: gene Location: 3451-3777 bp Feature: domain Description: GIIM Note: maturase Location: 3484-3703 bp Feature: domain Description: GIIM Note: maturase Location: 3484-3703 bp Feature: gene Location: 4130-4372 bp Feature: gene Location: 4284-5936 bp Feature: domain Description: ushA Location: 4296-5934 bp Feature: domain Description: ushA Location: 42 96-5934 bp Feature: gene Location: 6277-6723 bp Feature: domain Description: PHA02517 Location: 6280-6721 bp Feature: domain Description: PHA02 517 Location: 62 80-672 1 bp Feature: gene Location: 6840-8363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7113-7845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7113-7845 bp Feature: domain Description: GIIM Note: maturase Location: 7920-8118 bp Feature: domain Description: GIIM Note: maturase Location: 792 0-8118 bp Feature: gene Location: 8317-8742 bp Feature: gene Location: 8955-9236 bp Feature: domain Description: PHA02517 Location: 8961-9171 bp Feature: domain Description: PHA02 517 Location: 8961-9171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)