myRT

myRT report for GCA_900486965.1_18787_4_88

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Seq: UDWY01000173.1 Shigella flexneri strain 4028STDY6275001 genome assembly, contig: ERS1017665SCcontig000173, whole genome shotgun sequence (5729 bp)
Overview 1 RT 1: 413-3548 bp Neighborhood of RT #1 [413, 3548] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 413-1162 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1 1 42 bp Feature: gene Location: 1558-1758 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: domain Description: Tra5 Location: 1 567-1 741 bp Feature: gene Location: 1771-2574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071 -2566 bp Feature: gene Location: 2627-2953 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: gene Location: 3306-3548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDWY01000164.1 Shigella flexneri strain 4028STDY6275001 genome assembly, contig: ERS1017665SCcontig000164, whole genome shotgun sequence (6080 bp)
Overview 1 RT 1: 1633-5152 bp Neighborhood of RT #1 [1633, 5154] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1633-1761 bp Feature: gene Location: 1851-2090 bp Feature: domain Description: PHA02517 Location: 1854-2025 bp Feature: domain Description: PHA02 517 Location: 1854-2 02 5 bp Feature: gene Location: 2682-4205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2955-3687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 955-3687 bp Feature: domain Description: GIIM Note: maturase Location: 3762-3960 bp Feature: domain Description: GIIM Note: maturase Location: 3762 -3960 bp Feature: gene Location: 4230-4421 bp Feature: gene Location: 4507-5154 bp Feature: domain Description: PHA02517 Location: 4510-5152 bp Feature: domain Description: PHA02 517 Location: 4510-5152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDWY01000168.1 Shigella flexneri strain 4028STDY6275001 genome assembly, contig: ERS1017665SCcontig000168, whole genome shotgun sequence (5959 bp)
Overview 1 RT 1: 3204-5857 bp Neighborhood of RT #1 [3204, 5857] COG3547 RVT-GII GIIM Feature: gene Location: 3204-3689 bp Feature: domain Description: COG3547 Location: 3222-3675 bp Feature: domain Description: COG3 547 Location: 3 222-3 675 bp Feature: gene Location: 3785-3952 bp Feature: gene Location: 3978-5195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4164-4818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4164-4818 bp Feature: domain Description: GIIM Note: maturase Location: 4896-5118 bp Feature: domain Description: GIIM Note: maturase Location: 4896-5118 bp Feature: gene Location: 5206-5589 bp Feature: gene Location: 5663-5857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)