myRT

myRT report for GCA_900486975.1_18787_5_13

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Seq: UDXL01000020.1 Shigella flexneri strain 4028STDY6275022 genome assembly, contig: ERS1017620SCcontig000020, whole genome shotgun sequence (54742 bp)
Overview 1 RT 1: 1618-9034 bp Neighborhood of RT #1 [1618, 9036] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1618-1746 bp Feature: gene Location: 1836-2075 bp Feature: domain Description: PHA02517 Location: 1839-2010 bp Feature: domain Description: PHA0251 7 Location: 1 839-201 0 bp Feature: gene Location: 2667-4190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2940-3672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2940-3672 bp Feature: domain Description: GIIM Note: maturase Location: 3747-3945 bp Feature: domain Description: GIIM Note: maturase Location: 3747-3945 bp Feature: gene Location: 4367-4753 bp Feature: domain Description: PHA02517 Location: 4370-4751 bp Feature: domain Description: PHA0251 7 Location: 4370-4751 bp Feature: gene Location: 4918-9036 bp Feature: domain Description: ESPR Location: 4921-4990 bp Feature: domain Description: ESPR Location: 4921 -4990 bp Feature: domain Description: Peptidase_S6 Location: 5071-7243 bp Feature: domain Description: Peptidase_S6 Location: 5071 -7243 bp Feature: domain Description: autotrans_barl Location: 7807-9034 bp Feature: domain Description: autotrans_barl Location: 7807-9034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDXL01000129.1 Shigella flexneri strain 4028STDY6275022 genome assembly, contig: ERS1017620SCcontig000129, whole genome shotgun sequence (9338 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 744-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 005-2 116 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 2 184-2 637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDXL01000094.1 Shigella flexneri strain 4028STDY6275022 genome assembly, contig: ERS1017620SCcontig000094, whole genome shotgun sequence (13324 bp)
Overview 1 RT 1: 8019-11154 bp Neighborhood of RT #1 [8019, 11154] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 8019-8768 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8094-8748 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8094-8748 bp Feature: gene Location: 9164-9364 bp Feature: domain Description: Tra5 Location: 9173-9347 bp Feature: domain Description: Tra5 Location: 9173 -93 47 bp Feature: gene Location: 9377-10180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9677-10172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9677-10172 bp Feature: gene Location: 10233-10559 bp Feature: domain Description: GIIM Note: maturase Location: 10266-10485 bp Feature: domain Description: GIIM Note: maturase Location: 10266-10485 bp Feature: gene Location: 10912-11154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII