myRT

myRT report for GCA_900486985.1_18787_5_90

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Seq: UDXG01000022.1 Shigella flexneri strain 4028STDY6275102 genome assembly, contig: ERS1017729SCcontig000022, whole genome shotgun sequence (52844 bp)
Overview 1 RT 1: 3-7114 bp Neighborhood of RT #1 [3, 7116] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3-155 bp Feature: domain Description: PHA02517 Location: 6-90 bp Feature: domain Description: PHA0251 7 Location: 6-90 bp Feature: gene Location: 747-2270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020-1 752 bp Feature: domain Description: GIIM Note: maturase Location: 1827-2025 bp Feature: domain Description: GIIM Note: maturase Location: 1 827-2025 bp Feature: gene Location: 2447-2833 bp Feature: domain Description: PHA02517 Location: 2450-2831 bp Feature: domain Description: PHA0251 7 Location: 2450-2831 bp Feature: gene Location: 2998-7116 bp Feature: domain Description: ESPR Location: 3001-3070 bp Feature: domain Description: ESPR Location: 3001 -3070 bp Feature: domain Description: Peptidase_S6 Location: 3151-5323 bp Feature: domain Description: Peptidase_S6 Location: 31 51 -5323 bp Feature: domain Description: autotrans_barl Location: 5887-7114 bp Feature: domain Description: autotrans_barl Location: 5887-71 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDXG01000155.1 Shigella flexneri strain 4028STDY6275102 genome assembly, contig: ERS1017729SCcontig000155, whole genome shotgun sequence (6441 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDXG01000187.1 Shigella flexneri strain 4028STDY6275102 genome assembly, contig: ERS1017729SCcontig000187, whole genome shotgun sequence (4066 bp)
Overview 1 RT 1: 2-1986 bp Neighborhood of RT #1 [2, 1986] Tra5 RVT-GII GIIM Feature: gene Location: 2-196 bp Feature: domain Description: Tra5 Location: 11-179 bp Feature: domain Description: Tra5 Location: 11-179 bp Feature: gene Location: 209-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1004 bp Feature: gene Location: 1065-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1317 bp Feature: domain Description: GIIM Note: maturase Location: 1098-13 17 bp Feature: gene Location: 1744-1986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)