myRT

myRT report for GCA_900486995.1_18787_5_89

Download annotations/find similar RTs

Seq: UDXJ01000022.1 Shigella flexneri strain 4028STDY6275101 genome assembly, contig: ERS1017728SCcontig000022, whole genome shotgun sequence (52732 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA0251 7 Location: 2360-2741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 291 1 -2980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3061 -5233 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDXJ01000156.1 Shigella flexneri strain 4028STDY6275101 genome assembly, contig: ERS1017728SCcontig000156, whole genome shotgun sequence (6290 bp)
Overview 1 RT 1: 974-4109 bp Neighborhood of RT #1 [974, 4109] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 974-1723 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1049-1703 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1049-1703 bp Feature: gene Location: 2119-2319 bp Feature: domain Description: Tra5 Location: 2128-2302 bp Feature: domain Description: Tra5 Location: 2 12 8-2 302 bp Feature: gene Location: 2332-3135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2632-3127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 632 -312 7 bp Feature: gene Location: 3188-3514 bp Feature: domain Description: GIIM Note: maturase Location: 3221-3440 bp Feature: domain Description: GIIM Note: maturase Location: 32 2 1-3440 bp Feature: gene Location: 3867-4109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDXJ01000164.1 Shigella flexneri strain 4028STDY6275101 genome assembly, contig: ERS1017728SCcontig000164, whole genome shotgun sequence (5869 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3 547 Location: 2184-263 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)