myRT

myRT report for GCA_900487005.1_18787_5_88

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Seq: UDXH01000002.1 Shigella flexneri strain 4028STDY6275100 genome assembly, contig: ERS1017727SCcontig000002, whole genome shotgun sequence (105040 bp)
Overview 1 RT 1: 1618-9034 bp Neighborhood of RT #1 [1618, 9036] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1618-1746 bp Feature: gene Location: 1836-2075 bp Feature: domain Description: PHA02517 Location: 1839-2010 bp Feature: domain Description: PHA0251 7 Location: 1 839-201 0 bp Feature: gene Location: 2667-4190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2940-3672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2940-3672 bp Feature: domain Description: GIIM Note: maturase Location: 3747-3945 bp Feature: domain Description: GIIM Note: maturase Location: 3747-3945 bp Feature: gene Location: 4367-4753 bp Feature: domain Description: PHA02517 Location: 4370-4751 bp Feature: domain Description: PHA0251 7 Location: 4370-4751 bp Feature: gene Location: 4918-9036 bp Feature: domain Description: ESPR Location: 4921-4990 bp Feature: domain Description: ESPR Location: 4921 -4990 bp Feature: domain Description: Peptidase_S6 Location: 5071-7243 bp Feature: domain Description: Peptidase_S6 Location: 5071 -7243 bp Feature: domain Description: autotrans_barl Location: 7807-9034 bp Feature: domain Description: autotrans_barl Location: 7807-9034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDXH01000163.1 Shigella flexneri strain 4028STDY6275100 genome assembly, contig: ERS1017727SCcontig000163, whole genome shotgun sequence (5968 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDXH01000165.1 Shigella flexneri strain 4028STDY6275100 genome assembly, contig: ERS1017727SCcontig000165, whole genome shotgun sequence (5845 bp)
Overview 1 RT 1: 2596-5297 bp Neighborhood of RT #1 [2596, 5317] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2596-2751 bp Feature: gene Location: 2777-3148 bp Feature: domain Description: GIIM Note: maturase Location: 2855-3074 bp Feature: domain Description: GIIM Note: maturase Location: 2855-3 074 bp Feature: gene Location: 3156-3959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3456-3951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 456-3 951 bp Feature: gene Location: 3972-4172 bp Feature: domain Description: Tra5 Location: 3981-4155 bp Feature: domain Description: Tra5 Location: 3 981-4155 bp Feature: gene Location: 4568-5317 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4643-5297 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4643 -5297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)