myRT

myRT report for GCA_900487015.1_18787_5_57

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Seq: UDXF01000022.1 Shigella flexneri strain 4028STDY6275066 genome assembly, contig: ERS1017693SCcontig000022, whole genome shotgun sequence (54744 bp)
Overview 1 RT 1: 1620-9036 bp Neighborhood of RT #1 [1620, 9038] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1620-1748 bp Feature: gene Location: 1838-2077 bp Feature: domain Description: PHA02517 Location: 1841-2012 bp Feature: domain Description: PHA0251 7 Location: 1 841 -201 2 bp Feature: gene Location: 2669-4192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942-3674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942-3674 bp Feature: domain Description: GIIM Note: maturase Location: 3749-3947 bp Feature: domain Description: GIIM Note: maturase Location: 3749-3947 bp Feature: gene Location: 4369-4755 bp Feature: domain Description: PHA02517 Location: 4372-4753 bp Feature: domain Description: PHA0251 7 Location: 4372-4753 bp Feature: gene Location: 4920-9038 bp Feature: domain Description: ESPR Location: 4923-4992 bp Feature: domain Description: ESPR Location: 4923-4992 bp Feature: domain Description: Peptidase_S6 Location: 5073-7245 bp Feature: domain Description: Peptidase_S6 Location: 5073-7245 bp Feature: domain Description: autotrans_barl Location: 7809-9036 bp Feature: domain Description: autotrans_barl Location: 7809-9036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDXF01000103.1 Shigella flexneri strain 4028STDY6275066 genome assembly, contig: ERS1017693SCcontig000103, whole genome shotgun sequence (12536 bp)
Overview 1 RT 1: 9886-12507 bp Neighborhood of RT #1 [9886, 12533] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 9886-10371 bp Feature: domain Description: COG3547 Location: 9904-10357 bp Feature: domain Description: COG3547 Location: 9904-10357 bp Feature: gene Location: 10467-10634 bp Feature: gene Location: 10660-11877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10846-11500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10846-11500 bp Feature: domain Description: GIIM Note: maturase Location: 11578-11800 bp Feature: domain Description: GIIM Note: maturase Location: 11578-11800 bp Feature: gene Location: 11888-12271 bp Feature: gene Location: 12354-12533 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12357-12507 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12 357-12 507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase )

Seq: UDXF01000161.1 Shigella flexneri strain 4028STDY6275066 genome assembly, contig: ERS1017693SCcontig000161, whole genome shotgun sequence (6271 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3 120 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 3 214-3 43 3 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)