myRT

myRT report for GCA_900487025.1_18787_5_15

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Seq: UIPW01000004.1 Shigella flexneri strain 4028STDY6275024 genome assembly, contig: ERS1017624SCcontig000004, whole genome shotgun sequence (80372 bp)
Overview 1 RT 1: 70932-78699 bp Neighborhood of RT #1 [70932, 78764] HTH_Tnp_1 PHA02517 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 70932-71120 bp Feature: domain Description: HTH_Tnp_1 Location: 70941-71070 bp Feature: domain Description: HTH_Tnp_1 Location: 70941 -71 070 bp Feature: gene Location: 71235-71912 bp Feature: domain Description: PHA02517 Location: 71250-71895 bp Feature: domain Description: PHA0251 7 Location: 71 250-71 895 bp Feature: gene Location: 71925-72728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72225-72720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72225-72720 bp Feature: gene Location: 72781-73107 bp Feature: domain Description: GIIM Note: maturase Location: 72814-73033 bp Feature: domain Description: GIIM Note: maturase Location: 7281 4-73033 bp Feature: gene Location: 73460-73702 bp Feature: gene Location: 73614-75266 bp Feature: domain Description: ushA Location: 73626-75264 bp Feature: domain Description: ushA Location: 73626-75264 bp Feature: gene Location: 75607-76053 bp Feature: domain Description: PHA02517 Location: 75610-76051 bp Feature: domain Description: PHA0251 7 Location: 7561 0-76051 bp Feature: gene Location: 76170-77693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76443-77175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76443-771 75 bp Feature: domain Description: GIIM Note: maturase Location: 77250-77448 bp Feature: domain Description: GIIM Note: maturase Location: 77250-77448 bp Feature: gene Location: 77647-78072 bp Feature: gene Location: 78285-78764 bp Feature: domain Description: PHA02517 Location: 78345-78699 bp Feature: domain Description: PHA0251 7 Location: 78345-78699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: UIPW01000161.1 Shigella flexneri strain 4028STDY6275024 genome assembly, contig: ERS1017624SCcontig000161, whole genome shotgun sequence (5792 bp)
Overview 1 RT 1: 3037-5690 bp Neighborhood of RT #1 [3037, 5690] COG3547 RVT-GII GIIM Feature: gene Location: 3037-3522 bp Feature: domain Description: COG3547 Location: 3055-3508 bp Feature: domain Description: COG3547 Location: 3055-3508 bp Feature: gene Location: 3618-3785 bp Feature: gene Location: 3811-5028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3997-4651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3997-4651 bp Feature: domain Description: GIIM Note: maturase Location: 4729-4951 bp Feature: domain Description: GIIM Note: maturase Location: 472 9-4951 bp Feature: gene Location: 5039-5422 bp Feature: gene Location: 5496-5690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)