myRT

myRT report for GCA_900487035.1_18787_5_14

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Seq: UDYL01000078.1 Shigella flexneri strain 4028STDY6275023 genome assembly, contig: ERS1017622SCcontig000078, whole genome shotgun sequence (20073 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDYL01000066.1 Shigella flexneri strain 4028STDY6275023 genome assembly, contig: ERS1017622SCcontig000066, whole genome shotgun sequence (22781 bp)
Overview 1 RT 1: 1292-5517 bp Neighborhood of RT #1 [1292, 5528] InsE PHA02517 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 1292-1618 bp Feature: domain Description: InsE Location: 1295-1616 bp Feature: domain Description: InsE Location: 12 95-1616 bp Feature: gene Location: 1858-2097 bp Feature: domain Description: PHA02517 Location: 1861-2032 bp Feature: domain Description: PHA02 517 Location: 1861-2 032 bp Feature: gene Location: 2689-4212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2962-3694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 962 -3694 bp Feature: domain Description: GIIM Note: maturase Location: 3769-3967 bp Feature: domain Description: GIIM Note: maturase Location: 3769-3967 bp Feature: gene Location: 4360-4662 bp Feature: domain Description: InsE Location: 4369-4651 bp Feature: domain Description: InsE Location: 4369-4651 bp Feature: gene Location: 4689-5528 bp Feature: domain Description: PHA02517 Location: 4713-5517 bp Feature: domain Description: PHA02 517 Location: 4713-5517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDYL01000160.1 Shigella flexneri strain 4028STDY6275023 genome assembly, contig: ERS1017622SCcontig000160, whole genome shotgun sequence (6325 bp)
Overview 1 RT 1: 520-3655 bp Neighborhood of RT #1 [520, 3655] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 520-1269 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: gene Location: 1665-1865 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: gene Location: 1878-2681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: gene Location: 2734-3060 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: gene Location: 3413-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)