myRT

myRT report for GCA_900487045.1_18787_7_73

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Seq: UDXM01000195.1 Shigella sonnei strain 4028STDY6275274 genome assembly, contig: ERS1017897SCcontig000195, whole genome shotgun sequence (5545 bp)
Overview 1 RT 1: 581-2551 bp Neighborhood of RT #1 [581, 2586] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 581-1270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1 244 bp Feature: gene Location: 1285-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1291-1435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 291 -1 435 bp Feature: domain Description: GIIM Note: maturase Location: 1513-1735 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 3-1 735 bp Feature: gene Location: 1928-2074 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1940-2051 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 940-2051 bp Feature: gene Location: 2101-2586 bp Feature: domain Description: COG3547 Location: 2119-2551 bp Feature: domain Description: COG3547 Location: 21 1 9-2551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UDXM01000250.1 Shigella sonnei strain 4028STDY6275274 genome assembly, contig: ERS1017897SCcontig000250, whole genome shotgun sequence (3459 bp)
Overview 1 RT 1: 546-3069 bp Neighborhood of RT #1 [546, 3218] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 546-767 bp Feature: gene Location: 1043-1825 bp Feature: domain Description: DDE_Tnp_1 Location: 1049-1757 bp Feature: domain Description: DDE_Tnp_1 Location: 1049-1757 bp Feature: gene Location: 1851-2054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2 049 bp Feature: gene Location: 2115-2471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2124-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 4-2 445 bp Feature: gene Location: 2565-3218 bp Feature: domain Description: HTH_23 Location: 2658-2745 bp Feature: domain Description: HTH_2 3 Location: 2 658-2 745 bp Feature: domain Description: InsE Location: 2874-3069 bp Feature: domain Description: InsE Location: 2 874-3069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: UDXM01000205.1 Shigella sonnei strain 4028STDY6275274 genome assembly, contig: ERS1017897SCcontig000205, whole genome shotgun sequence (5254 bp)
Overview 1 RT 1: 2186-4951 bp Neighborhood of RT #1 [2186, 4968] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2186-2428 bp Feature: gene Location: 2600-2755 bp Feature: gene Location: 2781-3308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2787-2931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2787-293 1 bp Feature: domain Description: GIIM Note: maturase Location: 3015-3231 bp Feature: domain Description: GIIM Note: maturase Location: 3 015-3 23 1 bp Feature: gene Location: 3318-3590 bp Feature: gene Location: 3607-4734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3907-4564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 907-4564 bp Feature: gene Location: 4747-4968 bp Feature: domain Description: Tra5 Location: 4759-4951 bp Feature: domain Description: Tra5 Location: 4759-4951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)