myRT

myRT report for GCA_900487055.1_18787_5_63

Download annotations/find similar RTs

Seq: UDXK01000126.1 Shigella flexneri strain 4028STDY6275072 genome assembly, contig: ERS1017699SCcontig000126, whole genome shotgun sequence (9597 bp)
Overview 1 RT 1: 1575-4808 bp Neighborhood of RT #1 [1575, 4808] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1575-1703 bp Feature: gene Location: 1553-2032 bp Feature: domain Description: PHA02517 Location: 1613-1967 bp Feature: domain Description: PHA0251 7 Location: 1 61 3-1 967 bp Feature: gene Location: 2624-4147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3629 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: domain Description: GIIM Note: maturase Location: 3704-3902 bp Feature: gene Location: 4324-4674 bp Feature: domain Description: PHA02517 Location: 4327-4591 bp Feature: domain Description: PHA0251 7 Location: 4327-4591 bp Feature: gene Location: 4680-4808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDXK01000080.1 Shigella flexneri strain 4028STDY6275072 genome assembly, contig: ERS1017699SCcontig000080, whole genome shotgun sequence (17615 bp)
Overview 1 RT 1: 14860-17513 bp Neighborhood of RT #1 [14860, 17513] COG3547 RVT-GII GIIM Feature: gene Location: 14860-15345 bp Feature: domain Description: COG3547 Location: 14878-15331 bp Feature: domain Description: COG3547 Location: 14878-15331 bp Feature: gene Location: 15441-15608 bp Feature: gene Location: 15634-16851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15820-16474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1582 0-16474 bp Feature: domain Description: GIIM Note: maturase Location: 16552-16774 bp Feature: domain Description: GIIM Note: maturase Location: 16552 -16774 bp Feature: gene Location: 16862-17245 bp Feature: gene Location: 17319-17513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDXK01000150.1 Shigella flexneri strain 4028STDY6275072 genome assembly, contig: ERS1017699SCcontig000150, whole genome shotgun sequence (6606 bp)
Overview 1 RT 1: 2584-6287 bp Neighborhood of RT #1 [2584, 6307] GIIM RVT-GII Tra5 RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2584-2739 bp Feature: gene Location: 2765-3136 bp Feature: domain Description: GIIM Note: maturase Location: 2843-3062 bp Feature: domain Description: GIIM Note: maturase Location: 2843 -3 062 bp Feature: gene Location: 3144-3947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444-3939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 444-3 93 9 bp Feature: gene Location: 3960-4160 bp Feature: domain Description: Tra5 Location: 3969-4143 bp Feature: domain Description: Tra5 Location: 3 969-4143 bp Feature: gene Location: 4422-4949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4722-4887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4722-4887 bp Feature: gene Location: 4962-5162 bp Feature: domain Description: Tra5 Location: 4971-5145 bp Feature: domain Description: Tra5 Location: 4971-5145 bp Feature: gene Location: 5558-6307 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5633-6287 bp Feature: domain Description: PAP2_acid_phosphatase Location: 563 3 -6287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)