myRT

myRT report for GCA_900487065.1_18787_5_48

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Seq: UDXI01000036.1 Shigella flexneri strain 4028STDY6275057 genome assembly, contig: ERS1017684SCcontig000036, whole genome shotgun sequence (38468 bp)
Overview 1 RT 1: 33356-36776 bp Neighborhood of RT #1 [33356, 36841] MFS_MdfA_MDR_like PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 33356-33613 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 33377-33587 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 33377-33587 bp Feature: gene Location: 33684-34130 bp Feature: domain Description: PHA02517 Location: 33687-34128 bp Feature: domain Description: PHA0251 7 Location: 33687-341 28 bp Feature: gene Location: 34247-35770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34520-35252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34520-35252 bp Feature: domain Description: GIIM Note: maturase Location: 35327-35525 bp Feature: domain Description: GIIM Note: maturase Location: 35327-35525 bp Feature: gene Location: 35724-36149 bp Feature: gene Location: 36362-36841 bp Feature: domain Description: PHA02517 Location: 36422-36776 bp Feature: domain Description: PHA0251 7 Location: 36422-36776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MdfA_MDR_like (cd17320), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDXI01000078.1 Shigella flexneri strain 4028STDY6275057 genome assembly, contig: ERS1017684SCcontig000078, whole genome shotgun sequence (18236 bp)
Overview 1 RT 1: 15217-17870 bp Neighborhood of RT #1 [15217, 17870] COG3547 RVT-GII GIIM Feature: gene Location: 15217-15702 bp Feature: domain Description: COG3547 Location: 15235-15688 bp Feature: domain Description: COG3547 Location: 152 35-15688 bp Feature: gene Location: 15798-15965 bp Feature: gene Location: 15991-17208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16177-16831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16177-16831 bp Feature: domain Description: GIIM Note: maturase Location: 16909-17131 bp Feature: domain Description: GIIM Note: maturase Location: 16909-17131 bp Feature: gene Location: 17219-17602 bp Feature: gene Location: 17676-17870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDXI01000117.1 Shigella flexneri strain 4028STDY6275057 genome assembly, contig: ERS1017684SCcontig000117, whole genome shotgun sequence (10668 bp)
Overview 1 RT 1: 520-3655 bp Neighborhood of RT #1 [520, 3655] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 520-1269 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: gene Location: 1665-1865 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: gene Location: 1878-2681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: gene Location: 2734-3060 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: gene Location: 3413-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)