myRT

myRT report for GCA_900487085.1_18787_5_62

Download annotations/find similar RTs

Seq: UDXO01000180.1 Shigella flexneri strain 4028STDY6275071 genome assembly, contig: ERS1017698SCcontig000180, whole genome shotgun sequence (4167 bp)
Overview 1 RT 1: 2-1986 bp Neighborhood of RT #1 [2, 1986] Tra5 RVT-GII GIIM Feature: gene Location: 2-196 bp Feature: domain Description: Tra5 Location: 11-179 bp Feature: domain Description: Tra5 Location: 1 1 -1 79 bp Feature: gene Location: 209-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1 004 bp Feature: gene Location: 1065-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1317 bp Feature: domain Description: GIIM Note: maturase Location: 1 098-1 31 7 bp Feature: gene Location: 1744-1986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: UDXO01000015.1 Shigella flexneri strain 4028STDY6275071 genome assembly, contig: ERS1017698SCcontig000015, whole genome shotgun sequence (61761 bp)
Overview 1 RT 1: 8637-16053 bp Neighborhood of RT #1 [8637, 16055] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 8637-8765 bp Feature: gene Location: 8855-9094 bp Feature: domain Description: PHA02517 Location: 8858-9029 bp Feature: domain Description: PHA02 517 Location: 8858-902 9 bp Feature: gene Location: 9686-11209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9959-10691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9959-10691 bp Feature: domain Description: GIIM Note: maturase Location: 10766-10964 bp Feature: domain Description: GIIM Note: maturase Location: 10766-10964 bp Feature: gene Location: 11386-11772 bp Feature: domain Description: PHA02517 Location: 11389-11770 bp Feature: domain Description: PHA02 517 Location: 11389-11770 bp Feature: gene Location: 11937-16055 bp Feature: domain Description: ESPR Location: 11940-12009 bp Feature: domain Description: ESPR Location: 11940-12 009 bp Feature: domain Description: Peptidase_S6 Location: 12090-14262 bp Feature: domain Description: Peptidase_S6 Location: 12 090-142 62 bp Feature: domain Description: autotrans_barl Location: 14826-16053 bp Feature: domain Description: autotrans_barl Location: 1482 6-16053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDXO01000162.1 Shigella flexneri strain 4028STDY6275071 genome assembly, contig: ERS1017698SCcontig000162, whole genome shotgun sequence (5970 bp)
Overview 1 RT 1: 3215-5868 bp Neighborhood of RT #1 [3215, 5868] COG3547 RVT-GII GIIM Feature: gene Location: 3215-3700 bp Feature: domain Description: COG3547 Location: 3233-3686 bp Feature: domain Description: COG3 547 Location: 3 23 3 -3 686 bp Feature: gene Location: 3796-3963 bp Feature: gene Location: 3989-5206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4829 bp Feature: domain Description: GIIM Note: maturase Location: 4907-5129 bp Feature: domain Description: GIIM Note: maturase Location: 4907-5129 bp Feature: gene Location: 5217-5600 bp Feature: gene Location: 5674-5868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)