myRT

myRT report for GCA_900487095.1_18787_5_1

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Seq: UIPS01000083.1 Shigella flexneri strain 4028STDY6275010 genome assembly, contig: ERS1017596SCcontig000083, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3547 Location: 1 4280-1 4733 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5222-1 5876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 1 5954-1 61 76 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIPS01000049.1 Shigella flexneri strain 4028STDY6275010 genome assembly, contig: ERS1017596SCcontig000049, whole genome shotgun sequence (29322 bp)
Overview 1 RT 1: 321-9358 bp Neighborhood of RT #1 [321, 9423] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 321-1070 bp Feature: domain Description: PAP2_acid_phosphatase Location: 396-1050 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 396-1050 bp Feature: gene Location: 1466-1666 bp Feature: domain Description: Tra5 Location: 1475-1649 bp Feature: domain Description: Tra5 Location: 1475-1649 bp Feature: gene Location: 1679-2170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1979-2150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1979-2 150 bp Feature: gene Location: 2371-2571 bp Feature: domain Description: Tra5 Location: 2380-2554 bp Feature: domain Description: Tra5 Location: 2 380-2 554 bp Feature: gene Location: 2584-3387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2884-3379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 884-3379 bp Feature: gene Location: 3440-3766 bp Feature: domain Description: GIIM Note: maturase Location: 3473-3692 bp Feature: domain Description: GIIM Note: maturase Location: 3473-3692 bp Feature: gene Location: 4119-4361 bp Feature: gene Location: 4273-5925 bp Feature: domain Description: ushA Location: 4285-5923 bp Feature: domain Description: ushA Location: 42 85-592 3 bp Feature: gene Location: 6266-6712 bp Feature: domain Description: PHA02517 Location: 6269-6710 bp Feature: domain Description: PHA02 517 Location: 62 69-6710 bp Feature: gene Location: 6829-8352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7102-7834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7102 -7834 bp Feature: domain Description: GIIM Note: maturase Location: 7909-8107 bp Feature: domain Description: GIIM Note: maturase Location: 7909-8107 bp Feature: gene Location: 8306-8731 bp Feature: gene Location: 8944-9423 bp Feature: domain Description: PHA02517 Location: 9004-9358 bp Feature: domain Description: PHA02 517 Location: 9004-9358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)