myRT

myRT report for GCA_900487105.1_18787_4_90

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Seq: UDYK01000162.1 Shigella flexneri strain 4028STDY6275003 genome assembly, contig: ERS1017669SCcontig000162, whole genome shotgun sequence (5852 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-1 57 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1 578-1 800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-21 1 6 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 21 84-2637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDYK01000018.1 Shigella flexneri strain 4028STDY6275003 genome assembly, contig: ERS1017669SCcontig000018, whole genome shotgun sequence (56397 bp)
Overview 1 RT 1: 3260-10676 bp Neighborhood of RT #1 [3260, 10678] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3260-3388 bp Feature: gene Location: 3478-3717 bp Feature: domain Description: PHA02517 Location: 3481-3652 bp Feature: domain Description: PHA02 517 Location: 3481-3652 bp Feature: gene Location: 4309-5832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582-5314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582 -5314 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: gene Location: 6009-6395 bp Feature: domain Description: PHA02517 Location: 6012-6393 bp Feature: domain Description: PHA02 517 Location: 6012 -6393 bp Feature: gene Location: 6560-10678 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: Peptidase_S6 Location: 6713-8885 bp Feature: domain Description: Peptidase_S6 Location: 6713-8885 bp Feature: domain Description: autotrans_barl Location: 9449-10676 bp Feature: domain Description: autotrans_barl Location: 9449-10676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDYK01000153.1 Shigella flexneri strain 4028STDY6275003 genome assembly, contig: ERS1017669SCcontig000153, whole genome shotgun sequence (6286 bp)
Overview 1 RT 1: 2585-5286 bp Neighborhood of RT #1 [2585, 5306] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2585-2740 bp Feature: gene Location: 2766-3137 bp Feature: domain Description: GIIM Note: maturase Location: 2844-3063 bp Feature: domain Description: GIIM Note: maturase Location: 2844-3 063 bp Feature: gene Location: 3145-3948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3445-3940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 445-3 940 bp Feature: gene Location: 3961-4161 bp Feature: domain Description: Tra5 Location: 3970-4144 bp Feature: domain Description: Tra5 Location: 3 970-4144 bp Feature: gene Location: 4557-5306 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4632-5286 bp Feature: domain Description: PAP2_acid_phosphatase Location: 463 2-5286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)