myRT

myRT report for GCA_900487115.1_18787_5_73

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Seq: UIQL01000005.1 Shigella flexneri strain 4028STDY6275082 genome assembly, contig: ERS1017709SCcontig000005, whole genome shotgun sequence (79108 bp)
Overview 1 RT 1: 73-8585 bp Neighborhood of RT #1 [73, 8734] InsE PHA02517 RVT-GII GIIM PHA02517 ushA GIIM RVT-GII PHA02517 DUF1016_N Feature: gene Location: 73-375 bp Feature: domain Description: InsE Location: 82-364 bp Feature: domain Description: InsE Location: 82-364 bp Feature: gene Location: 402-827 bp Feature: domain Description: PHA02517 Location: 426-762 bp Feature: domain Description: PHA0251 7 Location: 426-762 bp Feature: gene Location: 1419-2942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-2424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 692-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2697 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2697 bp Feature: gene Location: 3119-3505 bp Feature: domain Description: PHA02517 Location: 3122-3503 bp Feature: domain Description: PHA0251 7 Location: 31 22-3503 bp Feature: gene Location: 3846-5498 bp Feature: domain Description: ushA Location: 3858-5496 bp Feature: domain Description: ushA Location: 3858-5496 bp Feature: gene Location: 5824-5979 bp Feature: gene Location: 6005-6331 bp Feature: domain Description: GIIM Note: maturase Location: 6038-6257 bp Feature: domain Description: GIIM Note: maturase Location: 6038-6257 bp Feature: gene Location: 6384-7187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6684-7179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6684-71 79 bp Feature: gene Location: 7200-7772 bp Feature: domain Description: PHA02517 Location: 7218-7755 bp Feature: domain Description: PHA0251 7 Location: 721 8-7755 bp Feature: gene Location: 8255-8734 bp Feature: domain Description: DUF1016_N Location: 8312-8585 bp Feature: domain Description: DUF1 01 6_N Location: 831 2-8585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ushA (PRK09558), InsE (COG2963), DUF1016_N (pfam17761)

Seq: UIQL01000163.1 Shigella flexneri strain 4028STDY6275082 genome assembly, contig: ERS1017709SCcontig000163, whole genome shotgun sequence (5966 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)