myRT

myRT report for GCA_900487155.1_18787_5_29

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Seq: UDXP01000151.1 Shigella flexneri strain 4028STDY6275038 genome assembly, contig: ERS1017652SCcontig000151, whole genome shotgun sequence (6633 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDXP01000168.1 Shigella flexneri strain 4028STDY6275038 genome assembly, contig: ERS1017652SCcontig000168, whole genome shotgun sequence (5711 bp)
Overview 1 RT 1: 2578-5279 bp Neighborhood of RT #1 [2578, 5299] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2578-2733 bp Feature: gene Location: 2759-3130 bp Feature: domain Description: GIIM Note: maturase Location: 2837-3056 bp Feature: domain Description: GIIM Note: maturase Location: 2 837-3056 bp Feature: gene Location: 3138-3941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438-3933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3438-3933 bp Feature: gene Location: 3954-4154 bp Feature: domain Description: Tra5 Location: 3963-4137 bp Feature: domain Description: Tra5 Location: 3963-4137 bp Feature: gene Location: 4550-5299 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4625-5279 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 462 5-52 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDXP01000189.1 Shigella flexneri strain 4028STDY6275038 genome assembly, contig: ERS1017652SCcontig000189, whole genome shotgun sequence (4295 bp)
Overview 1 RT 1: 1631-3958 bp Neighborhood of RT #1 [1631, 4203] PHA02517 RVT-GII GIIM Feature: gene Location: 1631-1759 bp Feature: gene Location: 1849-2088 bp Feature: domain Description: PHA02517 Location: 1852-2023 bp Feature: domain Description: PHA02517 Location: 1852-2023 bp Feature: gene Location: 2680-4203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2953-3685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2953 -3 685 bp Feature: domain Description: GIIM Note: maturase Location: 3760-3958 bp Feature: domain Description: GIIM Note: maturase Location: 3 760-3 958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)