myRT

myRT report for GCA_900487165.1_18787_5_67

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Seq: UDXW01000024.1 Shigella flexneri strain 4028STDY6275076 genome assembly, contig: ERS1017703SCcontig000024, whole genome shotgun sequence (53788 bp)
Overview 1 RT 1: 668-8080 bp Neighborhood of RT #1 [668, 8082] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 668-796 bp Feature: gene Location: 882-1121 bp Feature: domain Description: PHA02517 Location: 885-1056 bp Feature: domain Description: PHA0251 7 Location: 885-1 056 bp Feature: gene Location: 1713-3236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986-2718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 986-271 8 bp Feature: domain Description: GIIM Note: maturase Location: 2793-2991 bp Feature: domain Description: GIIM Note: maturase Location: 2793-2991 bp Feature: gene Location: 3413-3799 bp Feature: domain Description: PHA02517 Location: 3416-3797 bp Feature: domain Description: PHA0251 7 Location: 341 6-3797 bp Feature: gene Location: 3964-8082 bp Feature: domain Description: ESPR Location: 3967-4036 bp Feature: domain Description: ESPR Location: 3967-4036 bp Feature: domain Description: Peptidase_S6 Location: 4117-6289 bp Feature: domain Description: Peptidase_S6 Location: 41 1 7-6289 bp Feature: domain Description: autotrans_barl Location: 6853-8080 bp Feature: domain Description: autotrans_barl Location: 6853-8080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDXW01000156.1 Shigella flexneri strain 4028STDY6275076 genome assembly, contig: ERS1017703SCcontig000156, whole genome shotgun sequence (6300 bp)
Overview 1 RT 1: 984-4119 bp Neighborhood of RT #1 [984, 4119] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 984-1733 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1059-1713 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1059-1713 bp Feature: gene Location: 2129-2329 bp Feature: domain Description: Tra5 Location: 2138-2312 bp Feature: domain Description: Tra5 Location: 2 138-2 312 bp Feature: gene Location: 2342-3145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2642-3137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 642 -3137 bp Feature: gene Location: 3198-3524 bp Feature: domain Description: GIIM Note: maturase Location: 3231-3450 bp Feature: domain Description: GIIM Note: maturase Location: 32 31-3450 bp Feature: gene Location: 3877-4119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDXW01000165.1 Shigella flexneri strain 4028STDY6275076 genome assembly, contig: ERS1017703SCcontig000165, whole genome shotgun sequence (5864 bp)
Overview 1 RT 1: 3214-5835 bp Neighborhood of RT #1 [3214, 5861] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3214-3699 bp Feature: domain Description: COG3547 Location: 3232-3685 bp Feature: domain Description: COG3 547 Location: 3 23 2-3 685 bp Feature: gene Location: 3795-3962 bp Feature: gene Location: 3988-5205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4174-4828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4174-4828 bp Feature: domain Description: GIIM Note: maturase Location: 4906-5128 bp Feature: domain Description: GIIM Note: maturase Location: 4906-5128 bp Feature: gene Location: 5216-5599 bp Feature: gene Location: 5682-5861 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5685-5835 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5685-583 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)