myRT

myRT report for GCA_900487185.1_18787_5_32

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Seq: UIPX01000132.1 Shigella flexneri strain 4028STDY6275041 genome assembly, contig: ERS1017658SCcontig000132, whole genome shotgun sequence (9179 bp)
Overview 1 RT 1: 413-9176 bp Neighborhood of RT #1 [413, 9176] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM Feature: gene Location: 413-1162 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1 1 42 bp Feature: gene Location: 1558-1758 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: domain Description: Tra5 Location: 1 567-1 741 bp Feature: gene Location: 1771-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071 -2272 bp Feature: gene Location: 2542-2742 bp Feature: domain Description: Tra5 Location: 2551-2725 bp Feature: domain Description: Tra5 Location: 2551 -2725 bp Feature: gene Location: 2755-3558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3055-3550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3055-3550 bp Feature: gene Location: 3611-3937 bp Feature: domain Description: GIIM Note: maturase Location: 3644-3863 bp Feature: domain Description: GIIM Note: maturase Location: 3644-3863 bp Feature: gene Location: 4290-4532 bp Feature: gene Location: 4444-6096 bp Feature: domain Description: ushA Location: 4456-6094 bp Feature: domain Description: ushA Location: 4456-6094 bp Feature: gene Location: 6437-6883 bp Feature: domain Description: PHA02517 Location: 6440-6881 bp Feature: domain Description: PHA0251 7 Location: 6440-6881 bp Feature: gene Location: 7000-8523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7273-8005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7273-8005 bp Feature: domain Description: GIIM Note: maturase Location: 8080-8278 bp Feature: domain Description: GIIM Note: maturase Location: 8080-8278 bp Feature: gene Location: 8817-9176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)

Seq: UIPX01000166.1 Shigella flexneri strain 4028STDY6275041 genome assembly, contig: ERS1017658SCcontig000166, whole genome shotgun sequence (5967 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)