myRT

myRT report for GCA_900487235.1_18787_6_10

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Seq: UDYT01000219.1 Shigella sonnei strain 4028STDY6275115 genome assembly, contig: ERS1017740SCcontig000219, whole genome shotgun sequence (4804 bp)
Overview 1 RT 1: 1751-4516 bp Neighborhood of RT #1 [1751, 4533] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 1751-1993 bp Feature: gene Location: 2165-2320 bp Feature: gene Location: 2346-2873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352-2496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352-2496 bp Feature: domain Description: GIIM Note: maturase Location: 2580-2796 bp Feature: domain Description: GIIM Note: maturase Location: 2580-2796 bp Feature: gene Location: 2883-3155 bp Feature: gene Location: 3172-4299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3472-4129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3472-41 29 bp Feature: gene Location: 4312-4533 bp Feature: domain Description: Tra5 Location: 4324-4516 bp Feature: domain Description: Tra5 Location: 4324-451 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: UDYT01000198.1 Shigella sonnei strain 4028STDY6275115 genome assembly, contig: ERS1017740SCcontig000198, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 3386-5365 bp Neighborhood of RT #1 [3386, 5391] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 3967-4134 bp Feature: gene Location: 4160-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: gene Location: 4702-5391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDYT01000157.1 Shigella sonnei strain 4028STDY6275115 genome assembly, contig: ERS1017740SCcontig000157, whole genome shotgun sequence (8848 bp)
Overview 1 RT 1: 4441-7738 bp Neighborhood of RT #1 [4441, 7806] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 4441-5472 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: HTH_3 3 Location: 4765-4912 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: domain Description: DDE_3 Location: 4969-53 89 bp Feature: gene Location: 5616-6284 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: domain Description: InsE Location: 5940-613 5 bp Feature: gene Location: 6378-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 81-6612 bp Feature: gene Location: 6648-7076 bp Feature: gene Location: 7090-7806 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-773 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)