myRT

myRT report for GCA_900487245.1_18787_7_54

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Seq: UDXT01000201.1 Shigella sonnei strain 4028STDY6275255 genome assembly, contig: ERS1017876SCcontig000201, whole genome shotgun sequence (5236 bp)
Overview 1 RT 1: 2186-4951 bp Neighborhood of RT #1 [2186, 4968] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2186-2428 bp Feature: gene Location: 2600-2755 bp Feature: gene Location: 2781-3308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2787-2931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2787-2931 bp Feature: domain Description: GIIM Note: maturase Location: 3015-3231 bp Feature: domain Description: GIIM Note: maturase Location: 301 5-3231 bp Feature: gene Location: 3318-3590 bp Feature: gene Location: 3607-4734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3907-4564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3907-4564 bp Feature: gene Location: 4747-4968 bp Feature: domain Description: Tra5 Location: 4759-4951 bp Feature: domain Description: Tra5 Location: 4759-4951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: UDXT01000194.1 Shigella sonnei strain 4028STDY6275255 genome assembly, contig: ERS1017876SCcontig000194, whole genome shotgun sequence (5500 bp)
Overview 1 RT 1: 564-2534 bp Neighborhood of RT #1 [564, 2569] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-12 2 7 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 74-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 1911-2057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923-2034 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 192 3-2 034 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3547 Location: 2 102 -2 534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UDXT01000150.1 Shigella sonnei strain 4028STDY6275255 genome assembly, contig: ERS1017876SCcontig000150, whole genome shotgun sequence (8824 bp)
Overview 1 RT 1: 4417-7714 bp Neighborhood of RT #1 [4417, 7782] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 4417-5448 bp Feature: domain Description: HTH_23 Location: 4495-4636 bp Feature: domain Description: HTH_23 Location: 4495-463 6 bp Feature: domain Description: HTH_33 Location: 4741-4888 bp Feature: domain Description: HTH_3 3 Location: 4741-4888 bp Feature: domain Description: DDE_3 Location: 4945-5365 bp Feature: domain Description: DDE_3 Location: 4945-53 65 bp Feature: gene Location: 5592-6260 bp Feature: domain Description: HTH_23 Location: 5700-5787 bp Feature: domain Description: HTH_23 Location: 5700-5787 bp Feature: domain Description: InsE Location: 5916-6111 bp Feature: domain Description: InsE Location: 5916-6111 bp Feature: gene Location: 6354-6614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6357-6588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 57-6588 bp Feature: gene Location: 6624-7052 bp Feature: gene Location: 7066-7782 bp Feature: domain Description: DDE_Tnp_1 Location: 7072-7714 bp Feature: domain Description: DDE_Tnp_1 Location: 7072-7714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)